AMCG00006844 (akr1d1,LOC108425343,LOC105020260,LOC108240983,LOC102198112)


Basic Information

Item Value
gene id AMCG00006844
gene name akr1d1,LOC108425343,LOC105020260,LOC108240983,LOC102198112
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 22652864 ~ 22672256 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006844
CAGAGCACAAGTATTGATAAACAATTGCACGTCATAATCAAAGTCACAAGGTATGGAAGCAAACAGGTCATTTCCTCTGTCCCACTTCCTGTGCTGCGTGCCTTCACTGCTCCCGATCTCAAGAAATAGATACCAAGACAGGACTGCCATCCCTTCCAACAGGAGCACACAACAGAGTGCATCTGTCTTGGACCAACATGAATTTGACAGCAGAAAGCCACCACATCCTTTTGAACGATGGAAATAAGATGCCACTTATAGGACTCGGAACCTATGGGGACCCACGGACAACCCCCAAAGGAACCTGTTATGAATCAGTAAAGTTGGCGATTGATGTTGGATACCGACACTTAGATGGAGCCTTGGTGTATTTCAATGAACACGAGGTTGGACAGGCCATACGGGAGAAAATCGCTGAAGGAAGCATCAAAAGGGAAGACATTTTTTACTGTGGCAAGCTTTGGAATACCTTCCACCCCCCCGAGTTGGTCAGACCTGCCCTGGAGAGGACTTTGAAGACTCTTCAACTGGACTACGTTGATCTCTATATAATTGAACTTCCCATTGCATTTAAGCCAGGGGACACATTTTACCCAAAAGATGAGAATGGGAAGCATATTTACCACGAGTCAGACCTTTGCGCTACATGGGAGGCTATGGAAGCATGTAAAGATGCAGGGTTGACGAAGTCCATTGGCTTGTCCAACTTCAATCACAGGCAAATGGAGCTGATCCTGAAAAAGCCAGGCCTCAAACATAAACCTGTTTCAAATCAGGTTGAATGTCACCCATATTTCACTCAGCCCAAGCTTTTAGAGTATTGCCGGCAGAATGACATTGTTATTGTGGGCTACAGCCCTTTGGGAACGGTCAATTTAACTTGCCCACCTCTGTTAGAAGATGCTCTTCTTGTGTCGATTGGAAAGAAGTACAACAAGACAACGGCGCAGGTGTCCTTGCGCTTCAATGTTCAGAGGGGTGTCGTGATCTTTGACTTCTCCCTTACCGATGAAGAAATGAAAGCCATTGAGGAGCTTAACAAAAATATACGCTTTGTGGAGCTGCTGATGTGGAGCGATCATCCAGAATACCCGTTTCATGATGAATTCTAGACATCGTTGGCATCAGAGCGTCAATCGACAGAAATCACACAAACCCGAGTTGAAAAGATTTGAAATGCAGGAGACTAATAAGAGCAAACCTAGATTGTGCatatctgtctgtatgtctgctGTTTCTGagatacatattttgtttgattttaaatgtttaacctACCTTCATGTATTTGTggaccattaaaaaaaaaacattcagcatATAGAAATGGGGTGcttataatacatgtaattgtatatatttgggatttgaaaagcaatttataAAACTCTTTATAACAAGAGGTGACCTAGATAATGTTGCCATGTCTGCATTACAGCCAGTTTATCATCTGCGGTGCGGTCACATTAATATAGTTCATGGTAAACAGCTCTACGAACAGATAAAACCACATCAAAGCTCATCTAAGGGGAAAGGAAGTGTATTACAATTTCCTgctgagattaaataaaaaatgtaaccaaGTATAATATGTcataaacatatgtattttgGATACATGTATTATTGATACTGCCGATCCTTGCTGGAAGTCATCTGgggtcagttgcataaaaccaTATTAGATTAGCCTAAAtcattagactagtcttaattTGTTAGTTAGACAgctgcataaaaaataagactGACTAAGGCTaaaagttagcctcctcaccCAAAGGCTATCTTACAATAGAAGTCTTTCCATGGAAACAGTTTGCCTGAGTCTACAAcactgtcactgatgctgacGGGCGGAGCCTCCCATTGGCTCTAATACAATCCGCTGTCCCACCCACCGGCAATCCCCCAAAACATAGAGACTCCTCCCCCAATAACCAATCCTGTT

Function

symbol description
akr1d1 Predicted to enable 3-oxo-5-beta-steroid 4-dehydrogenase activity; alditol:NADP+ 1-oxidoreductase activity; and ketosteroid monooxygenase activity. Involved in cellular hormone metabolic process; cholesterol catabolic process; and digestion. Acts upstream of or within bile acid biosynthetic process. Located in cytosol. Implicated in congenital bile acid synthesis defect 2.

NR:

description
PREDICTED: 3-oxo-5-beta-steroid 4-dehydrogenase

GO: NA

KEGG:

id description
K00251 AKR1D1; 3-oxo-5-beta-steroid 4-dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006844 True 1951 mRNA 0.42 10 22652864 22672256

Neighbor

gene id symbol gene type direction distance location
AMCG00006842 LOC105018463,LOC106560992,LOC106584495,LOC107701192,LOC103380318,LOC105913395,LOC101155025,LOC105938539 coding upstream 205442 22400094 ~ 22447422 (+)
AMCG00006843 NA coding upstream 253019 22355580 ~ 22399845 (+)
AMCG00006835 NA coding upstream 639033 22004352 ~ 22013831 (+)
AMCG00006834 NA coding upstream 653138 21996225 ~ 21999726 (+)
AMCG00006836 LOC108264267,LOC107559327,LOC108414616 coding upstream 658536 21937375 ~ 21994328 (+)
AMCG00006849 kdm5a coding downstream 16928 22689184 ~ 22714844 (+)
AMCG00006850 NA coding downstream 82432 22754688 ~ 22772629 (+)
AMCG00006851 usp15 coding downstream 102464 22774720 ~ 22805606 (+)
AMCG00006853 NA coding downstream 137047 22809303 ~ 22817363 (+)
AMCG00006852 mon2 coding downstream 154727 22826983 ~ 22862037 (+)
G112832 NA non-coding upstream 196900 22455762 ~ 22455964 (+)
G112807 NA non-coding upstream 341404 22294688 ~ 22311460 (+)
G112802 NA non-coding upstream 394478 22257550 ~ 22258386 (+)
G112762 NA non-coding upstream 441072 22137485 ~ 22211792 (+)
G112758 NA non-coding upstream 584441 22068221 ~ 22068423 (+)
G112868 NA non-coding downstream 10704 22682960 ~ 22683187 (+)
G112938 NA non-coding downstream 191729 22863985 ~ 22864508 (+)
G112940 NA non-coding downstream 205133 22877389 ~ 22881356 (+)
G112954 NA non-coding downstream 280924 22953180 ~ 22956200 (+)
G112955 LOC105913372 non-coding downstream 284992 22957248 ~ 22958605 (+)
AMCG00006829 NA other upstream 1030356 21617632 ~ 21622508 (+)
AMCG00006820 NA other upstream 1347986 21265253 ~ 21304878 (+)
G112600 NA other upstream 1449663 21142865 ~ 21203201 (+)
G112567 NA other upstream 1603826 21048336 ~ 21049038 (+)
AMCG00006811 NA other upstream 1707887 20937497 ~ 20944977 (+)
AMCG00006865 hipk2 other downstream 836893 23509149 ~ 23554741 (+)
AMCG00006878 ndufb2,LOC102790702 other downstream 1359833 24032089 ~ 24036112 (+)
AMCG00006884 ccnd2a,ccnd2,LOC106573197,LOC106561356,LOC107575166,LOC107686624,LOC107732799 other downstream 1632440 24304696 ~ 24335916 (+)
AMCG00006893 ndufa9,LOC107572617,LOC107686627,LOC107732787 other downstream 1836747 24509003 ~ 24587119 (+)
G113369 LOC108442871 other downstream 2945811 25618067 ~ 25618445 (+)

Expression


Co-expression Network