AMCG00006850


Basic Information

Item Value
gene id AMCG00006850
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 22754688 ~ 22772629 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006850
GCCCTCCTTTCTGCAGGCATTGGCTATGCAACACAGGTCATTGTAGCTCTCCTCAATTTCTACTACATCATCGTGCTGGCCTGGGGAATTTTCTATCTGTGTAATTCCTTTACATGGGACTTACCGTGGGCCACCTGCAACAACTTCTGGAATACAGGTACCCAAATTTTCTTCTCTTATGCCATTTGCCTGGGCTGCCTTACTGCTCTGGGGAGCTACAATAAGTACAATAACAACTGTTACAGGGCGGGATGTACATCTTCCAGCTGTTTGATTATTATGCAGCCAGTGGGATGTGCCTCCTCTTTGTGGCTATTTTTGAGACAGTTTGCATTGCATGGATTTATGCGCATCCAGCAGCTAATCAGACCTTCTGACGATCTCCCCAAGACCAAGAAGGAGCAGGAGAAGCTTCTGGCCATCTTTGCACCTGATGGGGGTGTACACCAGCAGGGGGAGCCCACCAAAGAGGGGTACTTCCCTGTCCCTGAAAAGGAGTCCAACTGCTAGAGCCACAACTAATAAAGCCTCCTGGTCTGAATAAAGCAGAAGGCTGCTTCCACTTCTTCAATACCTCAAACTTGACATCCAAAAACCAGAtatgcagaaagaaagaaaaaaagaatcgaagaaagaagaaaacaacgTACCACACCTGTGAAGTTTTGTATTAACTATTGTGTTGTCAGATACAGATTGTCGTTGTTGttgattaattttatatttactgaTACTTTAGTGGAGCAAGCTGCAAGCGGAGTTGGAAGCTTACTGTGGGCACAATATCATCTCAAAAAAGGAagtcttcagttttgtttttctttacatttttcactgggTTGGCTTCCTATTTTTTTATAGTCATTACAGTGCCTTTAGATATTCATTGGTTTGTGTTAGATGTTGCGAATGTCCCCCAGTGAAGTTCACCTGACATGGAAGAATCGTGATTGGAAACCACttgatgtgtttttcaaaatgagaGAGCAAGTTTTCTTTAAGTggtattgttttgttgaatttgaggaacatttcaaatatttaaaaagaaacatgctatatatttattcttctaGATTAAGAGAGATATGTTATTACATGAAGAACACCAACAGTACTTTATACATCCTTAGCTTgaatttctgtttctctctgtacaGACATTTGTGTGAAAGTTTACCACGGATTTGGAGGTTGGGCTCCAGAACTGTAGGTTGGTATGTTAAGAAGAAAGGATTGGTGGACTcttgtcatttaaaacattggATTAATGTCTCCCataaagaaaaaatctaaacaaaatcaaatgacaaaacagaaataGATTCCCGAAAGGctcaatcatttaaaatctcTGCTCAGAGTGCTGGTTGAGTCCTGTAGTCCAACGAACGCAGGTTTGAATATGGGCTCTGTCATTGGCGATTCCCATATTAGAAATGCTGATTCAAATATGTTAATCACCAAGGGACAGCATGCTATTGGCTAAGTGCCATCTTCCAAGGTTGGAGTTCATTTGGCTtccttcaaaatgaaaactactgtggTTTACAGGGCCCTTTTGTCTGCAGCATGATCAGACAAGAGCTGTGCAGTACCCACATCTCTAGCATTCGTTGCTGGAGTTATAGGGAGGAGCTGAATCACAAATTAAGAGGATATAAAAGGAAACAACGGTTGCAGATTTCAAATTTATctttaaatcaatgaaaaaggaaaggatAAGATGATGAAAGTCCTGCACCTCTGCCCATCCAATTTAATAGCTTATTAACTCCCTGATCGTGATTAATCTCTCAGCAAGAACACCACcgtgtgttttcattattgttcaAGGAAAGTCAAAGTGATGACTCCTCCTTCTGCTCATCTCTCTGGTATTCGCTGAGAGAAGTCTCCAGTTCAGAGTGCATGGACTCTGACATGTACACCTGTAACAAAGCCACCCGGCTGCTCTAAGGCAACACCACTGTGATTAAACCTGGCTTGGTAACTACATTAAGTATGACATCATGCTAGGTGCCCAACTCACTAGCTGCTGATGACACTTTTATTCTCTGTCCAAGAAATGGGGCTACagttatctttctctccctaATGATACATATGAAACCCTTTAACATGCACCTTATATCATTAAAGAGGAAGGAGGCCAATTTTGCTTTGCTTGATATGCGCATCCATTCAACAAATCTACATATGAATCTAGTTGCCCATGAATGTATGCCAGGCTGCTTCTTTTAGATCCATAAGCTTTGTGCAAGTCATGTGGCACTGCCTCCAACTAATGTAAAACTGGTGCCGGGATTGCAGTATCTTATTGCTGGAACCTTTAAAAAAGTCTTCCAGCTACACCTCCAAACCATTGATTGCTTTCCTTGTGTTTCACCCATCCCATCTTCCTTGTGCACTTCAGCATTTTGATTGGCCAACTTCCAGCTCAGTCTCCTCTCGTGCAACATGCTGTAGAGAAGAGGAGAGTACATGGGTTATTAAACAGTAGCAGCATTTTCCAGAGTGACTGCTGGAGTCATTCATATAAGGCCAGGTTCTCTATTTGCACCATTTTCTAAGGGAGATTTGGCATCAGTGTGTTTGCAAAGCTGTGGATTATCCAATGaggcatttccaaaacaaaacaggatattttgtaaacacatgaaaaagatctaatttagaaaagaaaagctcTGTTTTTGGGGAGGAAAGAGCCATAAGACTTGAAAGTGTTATGTGGCATAATTGCAAAACTATAGGATactattttaataagaaaataattgttttacatttgttacaCACCAAGTTATAGTACACCAGAGTTTACAACATAGAGATCCCTGCTCACAAGTGCCGTTCAGCTATTCCTTTGTATGGGAAAGCTTGCATGCCTCATAATAGTTTTATATGCATTAACAATCTTTGACATTTCACACAACTGCATCTTTGCAGGTGTCCTGTTACTTGGGTCATATCAGCAGGGCTAACtatatttactgttaaaaataggaaactatATGTGTAACCAGGGACTCTTGCATGGACTGAAACATGTACACTACATGCCATAATCAAGTTCATTTTTGATAAACTAGTcgtgttttatgaatatgacccatattattttcaaaaggggcAAGAAGATGTAGGGGATTttcaaaacatgatttatgtaaccaaattattttatattatctttAAAGGAGCATAAAGATGACACATTACATCCTAGTGAGTATAATATGTgacttgaatttgtttttaggGATTACTTTTGCCACCTTGTTTCTTACTTGGTACATACTCCTATGTGTCTTATACACTAGTGTTTTGTTATGCAGAATGAAGCTGTATGGCACAGTCTTTAGAACATCCTAGATCAGCTATAATATTCTGAAAGAATTGTAGAACTTACTTCCTTATCATACGTCTCTGGGATCATTGCAGAGGTCCTGTTTCCAAGGGAACAATTAGGTTATACTGGAAACAACAATCCAAGGAGAACCGTCCCAGAATAACAAAGTCCACTTTTTGTGCACCTGTAAGCCTAAATGGGGAAAAGCATCAAGTAAGACATTctaaataaagtaaaagaaGCTGTCAATTCGCCTAATATTCCATATTTATTGGATGATACTTGCCTTGAAAGAACATgatcatgtattatttttgattaactCTCACACAAATGTCTGTTGTTGTATGATACTGTTGTTTTTAGCTTTTAGATTTAAGCAGATCAATTGTGATTACGGTCCTTTCTTTAAGTCATAACCTTTCCAGTCACTAATTTTTAGTGATAAGTTGACAGATTGTTGTCTATCGGTTTTTACAGATATACTGACgtaggcatgtttttttttttttttaatctcatctTGCTTTTTTATATACCTAAAGATAACTTGAGGATATGCAAAAGCACATTAATTACAACCTCTCTATGGATTTGTTGTCAAAAGGAGGCTTGATTGTGGTACTTTGAacttttttatggttttgttttttacagtttttgtttttctacaaatTAATGGTGaactataatatacatttcatgcaCTTATTCTTGTTTCTGTTTGCCTTTGATGAAGGACTGAATGCATCTTCACGTAGGttccatgttttgtttccttacACCGATTTATAGTTTATACTCTTGTGGTTTTTGTGGGCAGAATAGGAAAAACCTAGCTATATATGGCTGTATATGGCTATACACTAaatgaaagagacagaaaatatTCTCACTATAAAATTGGGTCGAAGGAATCAATGCAAGTTAATTATGATCATATTCCAGTCTAGACTACCTGAGTGTGTTACTGTAACTGATGTTGCCATCTCTCCGTGTTTCAAGAAGttgattatttttctcattgtcttttttattttatttttactaaccTGTGTTGTGCAAAACTGGctgttattttatgtgttgAAACAAGGGAGTATTACAATTGCACATATATAAAAAGGGCAATCataaacattcatattaaaatggaCAAAAAAGACTCAGATTACTGGTTAAATCCTCCCAGAGGAATATTAACTTCACAAGCGTTGGGTTCTTAAAGCTCAGTGAATCTTGGTGCACCAAGAGCTGGCTTTGTCTGGAGATTTATTGGGTTTGAAAGCTGAAAGGCTAAAAGGCCAGGACAGAATTCTTCCTGGCTTAGAATGTCCGCTGTATTTGCCTGTTGCTCTTTTGATTGGAAATTATTAGTTTCCAGGTTTGGCCAGTGTTGATGGGAGCAAGATTGATGTTGTTGGCACCGAGGTTGGGGCCTCACACTTTCCTGAAGAATCCAGTCCCTGTACTTCCTTGATTCAAGTTTAATCTCTGTGAATTGAGACCTTAAAAGGAAAACCCGCATGGACTGAATGGGTCgatcttttattcaaatccAGTGTCTTCAGTTTCCCAAGACCTTCTCTTCCACACCTAGGCCAGCTCGCCTTTCACTGGCAGGATGTTGGTCTGGCTTGCACAGTGCCTTTCTGTTcagctgggtgtgtgtgtgtgtcagtctccTTGTCACAGCTTTCATTCGGCTGCATTCAGGACTTACTCACGGAAAGTGCACACATTTCCGAAAAAAAAAGCTACGAAAACTCAAAAGCTTGCCTCGGCTACAATGCTACAATGGATTGTTTTGTATATCAGGATGCTGGTAAGGATAGAAACACTACATGCGTGGATTGCATACAGATAGTAATAGTTCTAACGcattactttacagcatttcatattaaaatcaaactgtTACCAAAACCTGGAACCTGGAATAGATTACATTAAAGACAGCTTTGTCTCGGTTAGAGATTTTGTATtggatttaattaaaccatgaacagtatttttagattaaatgtatcaatatgGAGCGGGATATACACAAGCAAATTTTTCTAGGATATCTGACACAAAGCTGAAACTTAAAATTAAGTTCGGAAATAGCTACATGTACACCGGAAAACTGACAATTACTGTGTTTAAAGCAATTTAATGATGGTCAGTTCttgagaaaaaagaagaaaaaaaatctggcaCTGCTTCAGTAACTCGAATTATTTTGTGTGAGAACCTGTATGTAGCTTTGCTATAGCAACAGGCCTGAAGCATTTCACTGAGTTTCTGGAGCACATAATTTACCTCTGCCAGTGATTTCCCAAAAGTATATTCTGCAGACCTTACATCACATGAACACTGTctaacaaataagaaaaaccGATAAAGCGCAACATTTCCTAGGAGTCCTTTTTAAGTTTTAGTTGGGCTTTAGTCTAATTCATTTGACCATTTGTGGCTATGTGGTCCTCTTCTGttactatttaaaatgaaaaatatgagtGCTTTATTCATGTTATCTAAAaactttatactttatactactttatacattttccacaaCTCTCTACTGCAGTGGCTTGATTTAAATTACCACAAAGAATTGAAAGTGTAAAAGTAATGATGTTGTTACGATTAATATGCACACTGCTGGAGTTTCGTAAAAGCACAGGAACCTGAACTACTGCGAATTATATTGAAGAGCTGCATTGTGGATCCAAGATGTCAGCATCTCTTTTGCACTGttatgttaaaatacatatggGTTAAAATTCAGGAAGATTAGGTGATGAAGGAGTTTGATACAGTGTAGCGCAAAACCGCATAACAGGCATTTGCTAAAGTGCTCATAGCCGTCACATATAAAAAGTATaactgaaattataaataaatgtaaatctgttttaatgATTATATCAATATGCTGTACCATGTGACAATTTACTCTTTTCTTTAAACTGCAGGAATATGAGTCACTCATGATTAAAACATAGTTGCTGTACACATTTGCTTGCCTCGTGATATGTAAGATGTGAAggattgttttataaaaaataaagtaacaatTTTGTCAATTGTCTTCACCAATTATAATTACACTGAAGACATGTTAATTCTATTCAGATGAGTTGCATGAGTGCCTCCTAAGTTAGAAAAGTAGACATCTTTCTATTAATTGTCTGTCGTCTTGCCTTTTCATATACAATGTTTGAAAGGCCCCAAGtgtatttgttaaacatttGCTCTGTGAAATCCAGAAATTGTGATTGGTTTCTGCAATTAGAAATCTGTATGAAATGTGTATAACAAAAGcagatatacaaatatatttataaactcaTAAAGAT

Function

GO: NA

KEGG:

id description
ko03050 Proteasome
ko05169 Epstein-Barr virus infection

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006850 True 6705 mRNA 0.37 4 22754688 22772629

Neighbor

gene id symbol gene type direction distance location
AMCG00006849 kdm5a coding upstream 39844 22689184 ~ 22714844 (+)
AMCG00006844 akr1d1,LOC108425343,LOC105020260,LOC108240983,LOC102198112 coding upstream 82432 22652864 ~ 22672256 (+)
AMCG00006842 LOC105018463,LOC106560992,LOC106584495,LOC107701192,LOC103380318,LOC105913395,LOC101155025,LOC105938539 coding upstream 307266 22400094 ~ 22447422 (+)
AMCG00006843 NA coding upstream 354843 22355580 ~ 22399845 (+)
AMCG00006835 NA coding upstream 740857 22004352 ~ 22013831 (+)
AMCG00006851 usp15 coding downstream 2091 22774720 ~ 22805606 (+)
AMCG00006853 NA coding downstream 36674 22809303 ~ 22817363 (+)
AMCG00006852 mon2 coding downstream 54354 22826983 ~ 22862037 (+)
AMCG00006856 NA coding downstream 376377 23149006 ~ 23157435 (+)
AMCG00006857 NA coding downstream 434564 23207193 ~ 23282722 (+)
G112868 NA non-coding upstream 71501 22682960 ~ 22683187 (+)
G112832 NA non-coding upstream 298724 22455762 ~ 22455964 (+)
G112807 NA non-coding upstream 443228 22294688 ~ 22311460 (+)
G112802 NA non-coding upstream 496302 22257550 ~ 22258386 (+)
G112762 NA non-coding upstream 542896 22137485 ~ 22211792 (+)
G112938 NA non-coding downstream 91356 22863985 ~ 22864508 (+)
G112940 NA non-coding downstream 104760 22877389 ~ 22881356 (+)
G112954 NA non-coding downstream 180551 22953180 ~ 22956200 (+)
G112955 LOC105913372 non-coding downstream 184619 22957248 ~ 22958605 (+)
G113075 NA non-coding downstream 807886 23580515 ~ 23597219 (+)
AMCG00006829 NA other upstream 1132180 21617632 ~ 21622508 (+)
AMCG00006820 NA other upstream 1449810 21265253 ~ 21304878 (+)
G112600 NA other upstream 1551487 21142865 ~ 21203201 (+)
G112567 NA other upstream 1705650 21048336 ~ 21049038 (+)
AMCG00006811 NA other upstream 1809711 20937497 ~ 20944977 (+)
AMCG00006865 hipk2 other downstream 736520 23509149 ~ 23554741 (+)
AMCG00006878 ndufb2,LOC102790702 other downstream 1259460 24032089 ~ 24036112 (+)
AMCG00006884 ccnd2a,ccnd2,LOC106573197,LOC106561356,LOC107575166,LOC107686624,LOC107732799 other downstream 1532067 24304696 ~ 24335916 (+)
AMCG00006893 ndufa9,LOC107572617,LOC107686627,LOC107732787 other downstream 1736374 24509003 ~ 24587119 (+)
G113369 LOC108442871 other downstream 2845438 25618067 ~ 25618445 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_024384 SLC6A13 coding NC_007136.7 CM002909.2 1695547 ~ 1720736 (-)