AMCG00006851 (usp15)


Basic Information

Item Value
gene id AMCG00006851
gene name usp15
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 22774720 ~ 22805606 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006851
TGCAAGGCGcctctgctgattggctgcGACCCCCTGCCTCCTGGTCCCGACGTAGCGCCACTGACGCTCGCCTTCCCAGGATGCAGCGGGCCCTGCTGGGGAAAGATGGCGGAGGGAGGAGCGGCTGATCTGGAAACTCAGCGAGCGGAGATCGCGGCGCTGTTAAAGACGCAGCTTCGGAAGGGAGACACTTGGTACTTGGTAGATAGTCGCTGGTTCAAGCAGTGGAAGAAATATGTCGGCTTTGACAGCTGGGACAAATACCAGATGGGAGACCAGAATGTGTACCCTGGACCGGTTGATAATTCAGGACTCCTCAAAGATGGTGACTCCCTCGCCCTCAAGGAACACCTCATCGATGAGCTGGACTACATCCTGGTCCCCACGGACGGGTGGAATAAGCTCGTCAGCTGGTATGGGTTGACCGAGAGTCAGGAGCCAATAGCACGCAAGGTGGTTGAACAGGGTATGTTTGTGAAGCACTGCAAAGTGGAGGTCTATCTCACAGAACTGAAGCTATGTGAGGATGGCAACATGGACAATGTTGTAACAAGACGGTTTAGTAAAGCAGACACGATAGATACCATTGAAAAAGAGATGAGGAAAATGTTCAGTATACCCGATGAAAAGGAAACTCGGTTGTGGAACAAGTACATGAGCAACACGTTTGAGCCTCTGAATAAACCTGACAGCACCATTCAAGATGCTGGTCTCTACCAAGGACAGGTTCTTGTAATAGAGCAAAAAAATGAGGATGGAACGTGGCCAAGAGGCTCTTCTACACCCAAgtcATCAGGTGCTTCCAATCTTTCAACTTTACCAAAGATCTCTCCCTCATCTCTAACAAACAATTATAACAGCTTCAACAACAGAAATGTAAAAAACTCAAACTACTGTATCCCGTCATATCCTCCATATAACAGCTATGACTATTCAGAGCCAGGAAGACACAATGAgcaggctggcctgtgtggccTCTGTAACCTGGGGAACACTTGCTTTATGAACTCTGCTGTCCAGTGTTTAAGCAATATACCTCCACTCACGGAATACTTCCTCAAAGATAAATACCAGGATGAACTCAACATGGACAACCCTTTGGGAATGCGAGGTGAAATAGCCAAAGTGTACGCAGAACTGATCAAGCAAATATGGTCGGGAAAATACAGCTATGTTACCCCAAGGCCTTTTAAGacgCAAGTTGGCAGGTTTGCACCTCAGTTTTCAGGCTACCAGCAGCAAGACTCTCAAGAGCTCCTGGCTTTTCTTCTTGATGGGCTACACGAAGATCTCaacagaataagaaaaaagcCATACATCCAGCTGAAAGATGCAGAGGGGAGACCAGATAAGGTTGTTGCTGAGGAAGCCTGGGAAAATCATATAAAAAGGAATGATTCGATCATTGTGGATATATTCCATGGACTCTTCAAATCTACCTTAGTCTGTCCTGTGTGTTCCAAAGTTTCAGTGACCTTTGACCCTTTCTGTTACCTGACACTTCCTCTCCCCATGAAAAAAGAACGCACTCTGGAGGTCTATCTGGTCAGATTGGATCCCCTTGCAAAACCAATGCAGtACAAACTGATTGTACCCAAGGTTGGGTACATTTCAGACctctgtgcttctctctctgctttatCTGGTGTACCTGCAGACAAGATGATTGTAACAGATATATACAACCATCGATTTCATAGAATATTTGCTACGAATGAAAATTTAAGTAGTATCATGGAACGGGATGACATTTATGTCTTTGAAATAGCTGTAAACCGGGTCGAGGACACCGAGCATGTTGTCATCCCTGTTCATCTGCGGGAGAAATACCGGCAGTCAGGTTACAACCACACCAGCTCGCCTTTGTTCGGGCAGCCCTTCCTCATCACGGTGCCCAGGAGCCTCAGTGAGGACAAGTTCTACAACATGCTGCTCATGAGGATGTGCCGATATGTTAGAACCTCACCAGAGcacgaggaggaggaagagacgCACTGTGCCAAAGACCACGGGATCAACGGCAATGGCAGCAACGGCGTGCTGGAGGAGGGTTCACCGAGTGAGATGGAGACGGACGAACAGGATGAGGAGTCCAGTCAGGACCAGGAGCTCCCTTCTGAGAATGacaacagccaatcagaggagTCCGTGGGTGGAGACAATGACCTGGAGAACGGGATTGGTCCAGAACAAACATGCAAAGGACATCAGTGTGTGGGACACAAAAAACGACTTTTTACATTCCAGTTCAATAACATGGGCAAAACAGACTTCAGCTACATCAAAGAGGAACCCAGGCAGATTCGGTTTGATGATGGGCATCTGAGGCTCAGCGATAGGTCGTATCTCTCTTTGGACTGGGAGCCTGAACTGAAGAACAACTACTTTGATGACAGTGCAGCGGAGGATTTTGAGAAGCATGAAAGCATGGAGTATAAACCTCAGAAAAAGGcctttttcaaattgaaagactgCATTGAGCTCTTCACTACAAAGGAGAAACTAGGAGCAGAAGATCCATGGTACTGTCCAAACTGTAAACAACACCAGCAAGCCACAAAGAAGCTGGACCTGTGGTCTCTGCCCCCTGTGCTCGTAGTGCACCTCAAGCGCTTCTCCTACAGCCGCTACATGAGGGACAAGCTGGACTCCCTGGTGGATTTCCCTATAAGTGATTTGGACATGTCCGAGTTCCTGATCAATCCCAATGCTGGCCCTTGTCGATATGATCTGATCGCTGTTTCTAATCATTATGGAGGAATGGGTGGTGGACACTATACCGCCTTTGCTAAGAATAAAGATGACAACAAGTGGTTCTACTTTGATGACAGTAGCGTTTCCCCTGCATCTGAGGAGCAAATAGTggcaagttatttatttacgTCAAAGGCTGCGTACGTGCTGTTCTACCAGAGGCAGGACACAATAAGTGGCACTGGTTACTTCGCACTGGATCGAGAAGACCAGGACGCCGCCACGGCTCTGGGAGCTAGTGCTCAGAGCGACGAGGACTTGATTGAGAACAATGACAACGACAATGACAATGAGGAGCATGATCTAAATAACGAAATCTGTATGCACACTAACTGAGGGGAATGTTGGAAGCCATATAAACAATTACAGTTACTAGCAAATATCTACACAGACACAGGAATGTTTCGTGGGGGAACGTCAACTCTTTGGTGCATCTATCACAAGAGACTAAGCAACCAGGGcatccttattttttttctctctcccccccatcCCATCTTGGACTCTTACCGATTGTCTGCATTGGTACTGCTGATCATGTTAGCAAGCCGACTACTTGCAAAGACAGCACAATGTCCCCCGTTATCGCATATTAAGAATGTCGGAGATTTGTGCttctcttgtttattttatattccttGAAAAACCAACAAGTTATTTGCATatcatatttatgttttgcctTGTAAATAATTCAGATGAGCACTGaaatgagttttgtttttcataatgtgGTAAAAAATGCTGGACTGTCACATATTGCACAATCATCCCATTTTGTAGATAGAATTAGTGCCACATGTACTGCaattgtttgaaaaaataaataaatactcagaGGGTCTTCACATGACAAATGTACTGCTAAAATAAGCTGCCTTTAACCTGTCGTAGTAAATGTGTATCGTTGGGCATTGCTACTCTtaaagttactttttttttaaaacattctttTTAATGCTGCTGTTACAATGATTCATCAAATGCCTCTTTCAAAACTGGCCCCGTATGCCTGGGATACTAAATACATGCACATCGATCTACACACAACACCAAataagatatttttattttgtactcgTAGTAAAGAAAGTGGTTCGTcgatgctttaaaaaaaaaatcattcttCACACAATCAATGTAGAGGCTTTGAGATTATAAATGTTGGTGATGCATTTgattcagatatatatatatttttttttcttttttcggtATCCAAATAGAAATCACCAGAGCCTTATGGTAATCTCAGACCATAACCTTTGCATTGTACAATTCCCATCTGCATGACCCAGcgcatataaaacaaatctgtcttgATTCGTCATCAAAAGGGGCCAGAATGTCAGCTGTATGTGTGAAGTTTTGACTGTTTTGATTGCTGCCTTCCATACATCGTAGATctagtttatttttcagtttgcgtttttcttttttggggggatggTTGGACTTTATTGCCTTGGATAGTAGCTATACAAATGCTGGGGTACTGTTACGTATCTTCTACTTAAAGTATATGCTTTATTGTAATCCACTAGCAGGAAAATGAATAGTGGTGTTTCTGGGGTTggggtgggatggggttgagggataggaataaatatttatctgaCTGACTGAGACGTGAAGTTAAATAGgctataaatattgtatataaaagTTCACTCTGTGAGTGCGCATTtggtaaattaatttatatgttagcattacacacaacaacaaacgaaaagcaatgtatttaaaCCAGGTCAAAGTGAGATGAATGGGATATGGCTTTGCTCTGTAGCTCATAAGTCTTGCCAGTGTTCTCTCCCTGGTGTTTTAAGGATCCTCTATGATTTTGAAATTTTGTAAAGTTAATACTAATGTCTCGCATGACAGGGGGTTCTTATTTTGGCTGCACTTGAGTTCACTTGggtttacatttgaaatgtgcatgtttatttatatacagactTCAATAAAGTTATGCAAAGCCTtactgttcttttcttttcttttcaatcttACTGTCTGCTGTGGgtcatgttcatttaaaataaacaaaaatatctgtCCTTCAAACTGTGAAACTTTAAT

Function

symbol description
usp15 Acts upstream of or within cranial skeletal system development and dorsal/ventral pattern formation.

NR:

description
PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 isoform X1

GO: NA

KEGG:

id description
K21343 USP15; ubiquitin carboxyl-terminal hydrolase 15

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006851 True 4839 mRNA 0.43 22 22774720 22805606

Neighbor

gene id symbol gene type direction distance location
AMCG00006850 NA coding upstream 2091 22754688 ~ 22772629 (+)
AMCG00006849 kdm5a coding upstream 59876 22689184 ~ 22714844 (+)
AMCG00006844 akr1d1,LOC108425343,LOC105020260,LOC108240983,LOC102198112 coding upstream 102464 22652864 ~ 22672256 (+)
AMCG00006842 LOC105018463,LOC106560992,LOC106584495,LOC107701192,LOC103380318,LOC105913395,LOC101155025,LOC105938539 coding upstream 327298 22400094 ~ 22447422 (+)
AMCG00006843 NA coding upstream 374875 22355580 ~ 22399845 (+)
AMCG00006853 NA coding downstream 3697 22809303 ~ 22817363 (+)
AMCG00006852 mon2 coding downstream 21377 22826983 ~ 22862037 (+)
AMCG00006856 NA coding downstream 343400 23149006 ~ 23157435 (+)
AMCG00006857 NA coding downstream 401587 23207193 ~ 23282722 (+)
AMCG00006861 NA coding downstream 479132 23284738 ~ 23289336 (+)
G112868 NA non-coding upstream 91533 22682960 ~ 22683187 (+)
G112832 NA non-coding upstream 318756 22455762 ~ 22455964 (+)
G112807 NA non-coding upstream 463260 22294688 ~ 22311460 (+)
G112802 NA non-coding upstream 516334 22257550 ~ 22258386 (+)
G112762 NA non-coding upstream 562928 22137485 ~ 22211792 (+)
G112938 NA non-coding downstream 58379 22863985 ~ 22864508 (+)
G112940 NA non-coding downstream 71783 22877389 ~ 22881356 (+)
G112954 NA non-coding downstream 147574 22953180 ~ 22956200 (+)
G112955 LOC105913372 non-coding downstream 151642 22957248 ~ 22958605 (+)
G113075 NA non-coding downstream 774909 23580515 ~ 23597219 (+)
AMCG00006829 NA other upstream 1152212 21617632 ~ 21622508 (+)
AMCG00006820 NA other upstream 1469842 21265253 ~ 21304878 (+)
G112600 NA other upstream 1571519 21142865 ~ 21203201 (+)
G112567 NA other upstream 1725682 21048336 ~ 21049038 (+)
AMCG00006811 NA other upstream 1829743 20937497 ~ 20944977 (+)
AMCG00006865 hipk2 other downstream 703543 23509149 ~ 23554741 (+)
AMCG00006878 ndufb2,LOC102790702 other downstream 1226483 24032089 ~ 24036112 (+)
AMCG00006884 ccnd2a,ccnd2,LOC106573197,LOC106561356,LOC107575166,LOC107686624,LOC107732799 other downstream 1499090 24304696 ~ 24335916 (+)
AMCG00006893 ndufa9,LOC107572617,LOC107686627,LOC107732787 other downstream 1703397 24509003 ~ 24587119 (+)
G113369 LOC108442871 other downstream 2812461 25618067 ~ 25618445 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000140_02365746_02379310 USP15 coding CI01000140 null 2364547 ~ 2379310 (-)