Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00006856 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030134.1 |
| NCBI id | CM030134.1 |
| chromosome length | 29342575 |
| location | 23149006 ~ 23157435 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016021 | integral component of membrane | cellular_component |
| id | description |
|---|---|
| K21052 | TMEM5; alpha-dystroglycan beta1,4-xylosyltransferase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00006856 | True | 927 | mRNA | 0.53 | 4 | 23149006 | 23157435 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00006852 | mon2 | coding | upstream | 286969 | 22826983 ~ 22862037 (+) |
| AMCG00006853 | NA | coding | upstream | 331643 | 22809303 ~ 22817363 (+) |
| AMCG00006851 | usp15 | coding | upstream | 343400 | 22774720 ~ 22805606 (+) |
| AMCG00006850 | NA | coding | upstream | 376377 | 22754688 ~ 22772629 (+) |
| AMCG00006849 | kdm5a | coding | upstream | 434162 | 22689184 ~ 22714844 (+) |
| AMCG00006857 | NA | coding | downstream | 49758 | 23207193 ~ 23282722 (+) |
| AMCG00006861 | NA | coding | downstream | 127303 | 23284738 ~ 23289336 (+) |
| AMCG00006860 | NA | coding | downstream | 146020 | 23303455 ~ 23320773 (+) |
| AMCG00006859 | NA | coding | downstream | 177651 | 23335086 ~ 23343567 (+) |
| AMCG00006858 | NA | coding | downstream | 197171 | 23354606 ~ 23369102 (+) |
| G112955 | LOC105913372 | non-coding | upstream | 190401 | 22957248 ~ 22958605 (+) |
| G112954 | NA | non-coding | upstream | 192806 | 22953180 ~ 22956200 (+) |
| G112940 | NA | non-coding | upstream | 267650 | 22877389 ~ 22881356 (+) |
| G112938 | NA | non-coding | upstream | 284498 | 22863985 ~ 22864508 (+) |
| G112868 | NA | non-coding | upstream | 465819 | 22682960 ~ 22683187 (+) |
| G113075 | NA | non-coding | downstream | 423080 | 23580515 ~ 23597219 (+) |
| G113090 | NA | non-coding | downstream | 563947 | 23721382 ~ 23721632 (+) |
| G113159 | NA | non-coding | downstream | 919318 | 24076753 ~ 24288917 (+) |
| G113224 | NA | non-coding | downstream | 1213283 | 24370718 ~ 24372835 (+) |
| G113233 | NA | non-coding | downstream | 1252622 | 24410057 ~ 24410304 (+) |
| AMCG00006829 | NA | other | upstream | 1526498 | 21617632 ~ 21622508 (+) |
| AMCG00006820 | NA | other | upstream | 1844128 | 21265253 ~ 21304878 (+) |
| G112600 | NA | other | upstream | 1945805 | 21142865 ~ 21203201 (+) |
| G112567 | NA | other | upstream | 2099968 | 21048336 ~ 21049038 (+) |
| AMCG00006811 | NA | other | upstream | 2204029 | 20937497 ~ 20944977 (+) |
| AMCG00006865 | hipk2 | other | downstream | 351714 | 23509149 ~ 23554741 (+) |
| AMCG00006878 | ndufb2,LOC102790702 | other | downstream | 874654 | 24032089 ~ 24036112 (+) |
| AMCG00006884 | ccnd2a,ccnd2,LOC106573197,LOC106561356,LOC107575166,LOC107686624,LOC107732799 | other | downstream | 1147261 | 24304696 ~ 24335916 (+) |
| AMCG00006893 | ndufa9,LOC107572617,LOC107686627,LOC107732787 | other | downstream | 1351568 | 24509003 ~ 24587119 (+) |
| G113369 | LOC108442871 | other | downstream | 2460632 | 25618067 ~ 25618445 (+) |
