AMCG00006857


Basic Information

Item Value
gene id AMCG00006857
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 23207193 ~ 23282722 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006857
ATGCAAGAAGAGGAAAATAGGAAAGATCACTCAGTGGAAGTTACAGACAATGACTTGGACAGCATAGTTTGGGACGGTGACAAAGGAGAGATCCGTGCCCAGCTTGTGGAGCAGCAGAAATGCCTGGAACAGCAGACAGAAATGAGGgttcagctcctccaggacctACAGGACTTCTTCCGCAAGAAGTCCGAAATCGAGATGGAGTACTCGCGCAACCTGGAGAAGCTGGCTGAGCGCTTTATGGCCAAGACCAGGAGCACCAAGGACCATCAGCAGTACAAGAAAGACCAGAATCTGCTGTCCCCGGTAAACTGCTGGTATTTGCTGCTGAACCAGGTCATGAAGACGTACCACATGTACCACACCGAGAGCATGAGTGCAGAGTGCAAGCTGAAGGAGGCGGAGAAGCAGGAGGAGAAGCAGATCAGCCGCTCCGGCGACCCGGTCTTCAGCATCCGCATGGAGGACAAGCACCAGAGACGGAGCTCTGTCAAAAAAATCGAGAAGATGAAGGAGAAGCGACAAGCCAAGTACTCGGAGAACAAGCTGAAGTCTATCAAAGCCCGGAATGAGTATCTGCTGACTTTGGAAGCGACGAACTCCTCTGTGTTCAAGTATTACATTCATGACCTGTCTGACTTAATTGATTGTTGCGATCTGGGGTACCATGCCAGTCTGAACCGGGCCCTGCGGACCTATCTCTCTGCTGAATACAACCTGGAGACCTCACGCCACGAGGGCCTGGATATTATTGAAAACGCAGTGGACAGCCTGGACCCTCGCAGTGACCGGCAGCGCTTCATGGAAATGTACCCGACTGCCTTCTGCCCACCCGTGAAGTTTGAGTTCCAGTCTCACATGGGAGATGAGGTCTGTCAGGTCACAGCCCAGCCGCCGGTGCAGGCTGAACTCATGCTGAGATTCCAGCAGCTGCAGTCCCGTCTGACCACGCTGAAGATCGAGAACGAAGAGATCAAGAAGACCACAGAAGCCACACTCCAGACAATTCAAGACATGGTGACCATAGAGGACTATGACGTGTCTGAATGCTTCCACCACAGCCGCTCCACGGAATCGGTCAAGTCGACAGTCTCGGAGACGTACCTCAGCAAGCCGAGCATCGCCAAGCGGAGAGCCAACCAACAGGAGACAGAGCAGTTCTATTTCATGAAATTCAGAGAGTTCCTAGAGGGAAGTAATCTCATCACAAAGCTGCAAGCGAAGCATGACTTACTGAAGAGGACACTGGGAGAAGGTCACAGAGCCGAGTACATGACAACCAGGCCGCCAAACTTGCCCCCAAAACCCCAGAAAACAAGGAAGCCTAGACCCCGCTCCTTGTTTAATGCTAAGTTGTTTAATGGGAATTTGGAGTCATTTATCAAGCCGGGGACGAAGGAACTCGCACACCAGACACCAGGCAATGACCCCCTGACAGATGAGGACAACCACGATATTAACTCAGTCGCTGGTGTTCTTAAACTGTACTTCAGAGGGCTGGAAAACCCACTCTTTCCCAAGGAAAGATTTAATGATCTCATTTCCTGTATCAGAATAGAAAATCTCTATGAGAGAGCTCTGTACATCCGCAAGATTCTCCTCACAGTGCCGAGGTCGGTCCTCATCGTGATGAGATACCTCTTTGCCTTCCTCAATCACTTGTCACAGTACAGTGATGAAAACATGATGGACCCCTACAACTTGGCCATCTGCTTTGGTCCTACCTTGATGCCAGTGCCAGACATTCAAGAGCAGGTCTCCTGCCAGGCACATGTGAATGAGATCATCAAAACCATCATCATCCACCATGAGACCATCTTCCCTGATGCCAAGGAGCTGGATGGTCCAGTGTATGAGAAGTGCATGGCTGGAGATGACTACTGTGACAGTCCCTACAGCGAACACGGCACACTGGAGGAGGTGGAGCAAGATGGCGGGACCGAGCCTCATACCAGCGAGGATGAATGTGAGCCCATCGAAGCAATAGCCAAATTTGATTACATTGGCAGGTCTGCCCGAGAGCTTTCCTTCAAGAAGGGGGCATCCCTGCTTCTCTACCAGCGGGCATCAGACGACTGGTGGGAGGGCCGACACAATGGCATCGATGGCCTGGTGCCACACCAGTACATAGTGGTTCAAGACATGGACGATACGTTTTCAGACACGCTGAGCCAGAAAGCGGACAGCGAAGCCAGCAGCGGACCGGTGGCAGAAGACAAATGTTCATCCAAGGATATCAGCTCTCCCACTGAGAGGCACCCAGAGGCCTACATCAGCAGACACAGGAAGAGAACCGAGGCTCTGCCCTCGCGCAGGCCCCCGGGCCGCGCTGGCGATGGCCACTGCACTGTGCACCCCTCCCAAGGCCACGGCCACAGCAACCCGTCCCACGAGATGAGCTCCCCCAACATGGGCAGCCACTACAGCCCGCGCTCCCTGCTGCACAACCGCAACCTGCCGCTGGACAGTCCCGAGCACCGGCGCCGCACCGGCCACGGCAGCCTGACCAACATCAGCCGCCACGACTCCCTCAAGAAGATGGAGAGCCCTCCCATTCGCCGGTCCACCTCCTCCGGCCAGTACACTAGCTTTACCGAGCCACACAAGCCCCTGGACCCCGAGACCATTGCCCAGGACATTGAGGAGACCATGAACACGGCCCTCAATGAGCTACGGGAGCTGGAAAGGCAGAGCTCAGCCAAGCATGCCCCCGACGTGGTGCTGGACACGCTGGAGCAGATGAAGAACGTGCCGACCCCTGCCAGCTCCACCGAGTCGCTCAGCCCCCTGCACGGCATCGTGGTGCGGGCCGTGGAGCCGCCCATGCGCCGCAGCACCAGCTCCTCCAGCGACACCATGAGCACCTTTAAGCCCGTGGTGGCACCGCGCATGGGCGTCGGGCTCAAACCGCCAGCCCTGCGCCCCAAACCCATGGTCCTACCCAAGGCCAGCCCCAGCCAACCCCCGCCACCCCCTGCCCAGGGCTCTGCAGACAAGTCGTGCACGATGTGAAGGCCTCGCCGCTCCTCGAGTTGTAAggaggaaagaaacaaaatggctttgcttaatattaataaaacttaGGAAACCACAGCTCTGACCAGATTTAAAGGGAAGTTAATAATGATAGTTACCGTGTTCGTAAGATGGGTGTGTGTTCTTTCAGTGTTTAGGAAGTTAATGTCTCCAGTTATAGTTGCATTTATTAACAAAGAAATATAAgggcatttttacatttcttggtAAAAACTGGACTATAGTAAAATTAAATGTCTATTtgaggttaaaaaaacaatagaattacttgaacaaaacaaaataagtcaaCGTATGCTGCACCACTAGATTGtaaaggaaacttttttttaaatatatatatgtatatatatgaaaaaagcaacacaaatcaCAAAGGCTTCCTGTGTggtaataaatatttcacatcatGGGTTTACAAAAACAGATGACTGTGAAAAAACGtagaagacaaataaaaaacgtTGCTTTTCAGTGTTAGTGCGCAACTTAGCCAGAGATATCTGGAAAACCAAGTCTGTCAACATAAGCTGAACAAGGCTGGGATCTACCCTCGGTTCGTCCTCATGCGTCTTAATGTAACACTGCTTTGGCCTTACTGCCATATAGAAATGATAGCTCCTCCCTTGCTAAGTGACTTGATAACCACTCCTTAAAGGTGTTGTATTCTCAAAAAGGATGTTTACAAAGGCTGATAAATGAGACAGCTGGGACTGTGAAGCACTGATCACATATAAGGGGTCTTCGCACCACAAAATCTCTTTGACAAAAAGAAATGGAAGCTGTTGTTTCCTGTCCAGCTGTTCACAAAGACAGTACTGTGTCAGGGTGGCAAGGGGCTGTGAACGGGAGAACAAATCAAAATTTAGAAAGATTGCTATCTTTGTTCATAGCAATCCTGCATATAGTCAAAACAGGTTAGAACAAGAGAACTCAGATGTGAGTAAAACTAATACCTTGGATctgcaataagaaaaataaatctacttCATGCATATCACAGACTTAGTACATTTTAaagtcattaaatatatatgatatatattaatgatccAGATACATACTTATGATCCGGATACCAGGCTGTTTAAGTGGGAGACAGGAGTGGCTTTTCTGTTAATGAATGTTACACCTTTccattttgtgcatttaaaagctCATGGGAGAGGAAATATCTCCATTCCACCTGAGTTGggcaaaaatatattctgcttgTCTTTCTCCCTCAGCAAAACTCTGTTTCAGTATCTATAGGAAGACTGAAACAAACAGTGAACTGTAGTCTGCATTTGTACCAGGACAGCTAGTCTGGTGGTACATGAATAGTCTTGTGTGTGGCATCTGGTGTGAATTCCTGTTGGGCTTCACGTCCTTTCAACACTGAGCTTCACTGAGACACACTTGTCCGGATCTCACTGCCAGTTCTGCCCTGTCAGCCCAGAGCACTTCTAGATTGTATTTCCTGTACACAACAAGGCTCTATCATTTGCTAATGCGTCATTCAGGTTGCCTGTCCAATATCTGCGCTTGCTACATTATTCTAAGGCATACGCCCTTTGCTTTTCCTCGAAAGATACACCCGGCACCACTCACTCACAGttccctctctcacacaaatGTTTACATACTGCTGGGAGTCAAGAGACCTGTGTAAAGCTGAAACCATCACCAGAAAAGTTCAACAGCCACTTTAAGAAACTTAATAGCTGACAAAGTTGACTTAACTGCTGATTTCTGTTCAGTGCCCCATCACGCATTAGGCCACAAGAGAGTGTGCTACCTTGATGTTAAATCATTCTTTCGGTTTCCCTCTGAAGTACTTTGTCTCTACTGCCACAGCTAACCAGCCTTGACTGTAGCCAGAAAACTGGCCTTGTTTGTGGAAACCAATTCAGTCTGGGAATGGAAGAGAAGCTTAactcaataaacacacacatcccaGTGATTGCTTAAGTGATAAAACCctcttaaataatgtatatgtgcCAGTTTCCATGaagttgaaaaagaaaagtaggCGCATGCATGAGAGGCCAGGCTCACGTTGTCTGGGAGGCTGATGTAATAACTCTGTGGTCTCACGAGAGCTGGGCTCATCTTTACCAACAACACTGCTGAGTTCTGAGTGATGAACAGCAGAGACATGGTTTTAGCCAAAGCCTGTTTCCAGAGTCTCTGAGTACAAACGCATTGTAAAGAATGGCCGGGAGGcatttttctgtaattaaaagtgTGTAACCGTGTGATATTtctatgtacaatatatttcaaaagtaAAAGTGGAAAACCGTGGGTTTCTAGGATGGGAtaatgcaactgcagctgtagaagGGCTTTGTTTGTGAAGAACTTGCCTCAACCTTGCAATAACCTTCCCCTTTTTTTAGTACTcatgaaaaacatgaacaagttatgataaaaaaaaaaggcccacTGTGTTATTAATAGCCAATCACGTACTGTAGAATAAGATTTTCTACTGGCTTTCTaacttgtctgtctgtttgtgtatttctttgaGGATCTGACACTGGGTACACTGCAAATGGGGggcaaaacatttcacaaacagaGTCCGCCAAGTAGAAACTCCCACGCACACCTCATAAAATCAGTGTTGTCCTTTGGCAATCATTGCAGCTCTGGTAGTTTCCTGCTTGTTGACTGTTACTTTATTGTGTCGATGTACATCCGTAGTATGTACATGTGAAAGTGCCTTTAAAATTTTAGAGGAACTTCAAACTTGTTCTGTACTGTTGCATTATCATTTCAATCCCTACATGATGAGCTAGTAGgcaactaaataataataataataaaaatacagttctgGAAAAGACAAATATTGCTAATCCATTGTGACATTGCACTTTTATGTATAGGACTGTATATTTTGGCATGTAGCATTATAACAAGTTGCAGTACACTTGCAGGGTTGTTCCTCTTAGTGTATCTTTCTAATAAAGGAAATAGTTCGGTCAGTGTGAGTTTTTTGAGTTCTTGtgagtgatttttttatttttttttcttctaatagCACTCAAACAATATCCATTGTTTAGGTGCATATCTATATTGGTATGACAAACTATACAGATACTTTAATACAAAAGTACAATACCAAGTGAGATATTGTTTTCTATATAGAATGTCTGTACAGAGCCATTTGACACGACCAGccattttacttaaaaaaaacaactaataataaataatgtataataaatgttGTAGAAAGTTCTACTGTGGAATActgc

Function

GO: NA

KEGG:

id description
K07526 SRGAP; SLIT-ROBO Rho GTPase activating protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006857 True 6296 mRNA 0.46 20 23207193 23282722

Neighbor

gene id symbol gene type direction distance location
AMCG00006856 NA coding upstream 49758 23149006 ~ 23157435 (+)
AMCG00006852 mon2 coding upstream 345156 22826983 ~ 22862037 (+)
AMCG00006853 NA coding upstream 389830 22809303 ~ 22817363 (+)
AMCG00006851 usp15 coding upstream 401587 22774720 ~ 22805606 (+)
AMCG00006850 NA coding upstream 434564 22754688 ~ 22772629 (+)
AMCG00006861 NA coding downstream 2016 23284738 ~ 23289336 (+)
AMCG00006860 NA coding downstream 20733 23303455 ~ 23320773 (+)
AMCG00006859 NA coding downstream 52364 23335086 ~ 23343567 (+)
AMCG00006858 NA coding downstream 71884 23354606 ~ 23369102 (+)
AMCG00006863 NA coding downstream 114147 23396869 ~ 23402875 (+)
G112955 LOC105913372 non-coding upstream 248588 22957248 ~ 22958605 (+)
G112954 NA non-coding upstream 250993 22953180 ~ 22956200 (+)
G112940 NA non-coding upstream 325837 22877389 ~ 22881356 (+)
G112938 NA non-coding upstream 342685 22863985 ~ 22864508 (+)
G112868 NA non-coding upstream 524006 22682960 ~ 22683187 (+)
G113075 NA non-coding downstream 297793 23580515 ~ 23597219 (+)
G113090 NA non-coding downstream 438660 23721382 ~ 23721632 (+)
G113159 NA non-coding downstream 794031 24076753 ~ 24288917 (+)
G113224 NA non-coding downstream 1087996 24370718 ~ 24372835 (+)
G113233 NA non-coding downstream 1127335 24410057 ~ 24410304 (+)
AMCG00006829 NA other upstream 1584685 21617632 ~ 21622508 (+)
AMCG00006820 NA other upstream 1902315 21265253 ~ 21304878 (+)
G112600 NA other upstream 2003992 21142865 ~ 21203201 (+)
G112567 NA other upstream 2158155 21048336 ~ 21049038 (+)
AMCG00006811 NA other upstream 2262216 20937497 ~ 20944977 (+)
AMCG00006865 hipk2 other downstream 226427 23509149 ~ 23554741 (+)
AMCG00006878 ndufb2,LOC102790702 other downstream 749367 24032089 ~ 24036112 (+)
AMCG00006884 ccnd2a,ccnd2,LOC106573197,LOC106561356,LOC107575166,LOC107686624,LOC107732799 other downstream 1021974 24304696 ~ 24335916 (+)
AMCG00006893 ndufa9,LOC107572617,LOC107686627,LOC107732787 other downstream 1226281 24509003 ~ 24587119 (+)
G113369 LOC108442871 other downstream 2335345 25618067 ~ 25618445 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013285 srgap1a coding NC_007129.7 CM002902.2 12867400 ~ 13056801 (-)
grasscarp (Ctenopharyngodon idella) CI01000013_08139954_08212837 SRGAP1A, SRGAP1 coding CI01000013 null 8139954 ~ 8212837 (+)