AMCG00006858


Basic Information

Item Value
gene id AMCG00006858
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 23354606 ~ 23369102 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006858
ATGGCTTACGCCAGGATTATCCACTATGCCACCAGCATCCTGTGCTGCAACAAGGGCTCCATGGACTACCTGCAACTGCACAGGAAAGTTTTCCAGCGTTTTGACATTTCGGAAGacgatttctggtacatagtgAGGAAATGTAGCCGGTTTTCGGTGGTGAGGAGCAGCAGCGACAAGAGCTCGGAGGACTGGCTCAGTTCCGAGTGCACCATCATCGCCAAAACATCCCTGCGCCTGTGCAAGAACTACACCAAACAGGAGTGCAGCCATTGCCAAGAGCTGCACTTGTGTAAATATTTCGTGTATGGCAACTGCAGATATGGCAAAGGAAGgaaAGAATGTAAATACTCTCATGATCTGAGATCAGATCACAACTATCCCATTCTGAGAGAATGCACCCTGCATGAACTAAATGAAGAAGAcctatttctgcttctgctgcAAAATGATCCATCTCTGCTCCCTGAGgtCTGCGCACATTACAATAAGGGGACTGGCTTATACGGAGCTTGTACATTCAAAACCAACTGCACAAAGCTTCACATCTGTCAGCACTTTGTCCAAGACAACTGTATGTTTGGCCACAAATGCAAGAGGTCCCACATGATTGATGAGCATGGTCGGAGAATGCTTGAAGAAAGAGGACTCAGTGGAGACATCATTCACGAACTGCCCTTTATATACAGGAACGTCTATAAATTAAATGCCCAAGGAATCGCAGACTGTGTAGCAGGGCCGTCCGTACAAGAGGAGGAGAAAAGTGAAATCTGTCTCCATTACATACGCAGGAACTGTATGTTTCAAGAACAGTGCATTCGTGTCCACTTCCATCTGCCCTACAAATGGGAAGTGTTTGATGGGACCTCCTGGAAGGAATTGCGGCACATGGAAGAGATTGAGAGGGCTTACTGTGAccccagaaacacacacagtaacGGGTCCCGGCCAATTGACTTCTTGTCAATGTCGAGGGAGTCCTCTTCAGTCAGACGCCTCTCCACAGCCTCCTCGGTCACCAAACCACCGCACTACATCCTCACGACAGAGTGGGTCTGGTACTATAAGGGCGACCATGAAAACTGGATTGAGTATGGAAAACCTGATGACAAACAAAGAGTCGCTTCCATCACTTcgaaggagctggagctggcattcCTTGCGGACAGTTCTGCAGAACTGACAGTTCTTAAAGGTCATCGGAAGTATATCCTCAGCTTTAGagACATGTATCAACGGAATCCTAAACACAACACCAAAAGGAGGGTGCGAAGAAGGCCTAGATTTGTTTCTGTCCAAGATGTGGAGAATAAAATTGCACGGCAAAAGCAACAGATGAAGAAGAGGAACGGAAAAGATGTAAAGGAGAAATTGCTATTTCATGGAACACAGAAGAGCAACGTAGAAGCCATCTGCAACCAGAACTTCGACTGGAGGATCTGTGGGATACATGGGACCGCCTATGGGAAAGGCACCTACTTTGCCACGGATGCCTCCTACTCCCACACTTACTCTGCCTCCGAGTCGGACAGGCGGCTCATGTTCGTGGCTCGAGTGCTGGTGGGGGAGATCACCGGAGGGAAAGCCAGCTACCTGCGCCCGCCTTCCAAAGACGATGGCAAGACCTTTTACGACAGCTGTGTGAACAACGTATCCCACCCCACGGTCTTTGTTGTCTTTGAGAAGCACCAGATCTACCCTGAATATATCATAGAGTACAGTAAGTAG

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006858 True 1728 mRNA 0.48 10 23354606 23369102

Neighbor

gene id symbol gene type direction distance location
AMCG00006859 NA coding upstream 11039 23335086 ~ 23343567 (+)
AMCG00006860 NA coding upstream 33833 23303455 ~ 23320773 (+)
AMCG00006861 NA coding upstream 65270 23284738 ~ 23289336 (+)
AMCG00006857 NA coding upstream 71884 23207193 ~ 23282722 (+)
AMCG00006856 NA coding upstream 197171 23149006 ~ 23157435 (+)
AMCG00006863 NA coding downstream 27767 23396869 ~ 23402875 (+)
AMCG00006867 hipk2 coding downstream 121908 23491010 ~ 23492095 (+)
AMCG00006872 NA coding downstream 205205 23574307 ~ 23580774 (+)
AMCG00006870 NA coding downstream 211793 23580895 ~ 23594391 (+)
AMCG00006871 NA coding downstream 226994 23596096 ~ 23596653 (+)
G112955 LOC105913372 non-coding upstream 396001 22957248 ~ 22958605 (+)
G112954 NA non-coding upstream 398406 22953180 ~ 22956200 (+)
G112940 NA non-coding upstream 473250 22877389 ~ 22881356 (+)
G112938 NA non-coding upstream 490098 22863985 ~ 22864508 (+)
G112868 NA non-coding upstream 671419 22682960 ~ 22683187 (+)
G113075 NA non-coding downstream 211413 23580515 ~ 23597219 (+)
G113090 NA non-coding downstream 352280 23721382 ~ 23721632 (+)
G113159 NA non-coding downstream 707651 24076753 ~ 24288917 (+)
G113224 NA non-coding downstream 1001616 24370718 ~ 24372835 (+)
G113233 NA non-coding downstream 1040955 24410057 ~ 24410304 (+)
AMCG00006829 NA other upstream 1732098 21617632 ~ 21622508 (+)
AMCG00006820 NA other upstream 2049728 21265253 ~ 21304878 (+)
G112600 NA other upstream 2151405 21142865 ~ 21203201 (+)
G112567 NA other upstream 2305568 21048336 ~ 21049038 (+)
AMCG00006811 NA other upstream 2409629 20937497 ~ 20944977 (+)
AMCG00006865 hipk2 other downstream 140047 23509149 ~ 23554741 (+)
AMCG00006878 ndufb2,LOC102790702 other downstream 662987 24032089 ~ 24036112 (+)
AMCG00006884 ccnd2a,ccnd2,LOC106573197,LOC106561356,LOC107575166,LOC107686624,LOC107732799 other downstream 935594 24304696 ~ 24335916 (+)
AMCG00006893 ndufa9,LOC107572617,LOC107686627,LOC107732787 other downstream 1139901 24509003 ~ 24587119 (+)
G113369 LOC108442871 other downstream 2248965 25618067 ~ 25618445 (+)

Expression


Co-expression Network