AMCG00006860


Basic Information

Item Value
gene id AMCG00006860
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 23303455 ~ 23320773 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006860
ATGTCTGCTGCCGCTGTGTCCAACTACGCGACCAAGGTCCTGTGCAGTAACCGGGGCTGTCTGGAGTACCGGCAGCTGCAGCGCAGGCTCAGCCCGGCTCTGGCCGTGTCGGATGCGCGGCTGTGCGAGGTGCTGCGGGACGGCGGCCGGTTCGTGGTCGTGCCCGGCGCGCAGGACAGGATCCCGGGCTGCCCGCTGAGCCCCGACAGCACCATCCTCGCCAAGACCTCAGTGCGGCTGTGTAAGAGCTACCCCAACTGCGGCCGCTGCGAAAACCTGCACCTGTGTAGGAACACATGCCGAAACTCGCACGACTTTCGCTCAGACCACAACTTGGCCATTTTGACAAGCAATCAGCTACAGGACCTGGAAGAAGCCGAACTGttccagctgctgctgcagaatGACTCTTACCTTCTGCCTGAGATCTGCCCCCATTATAACAAGGGCAATGGACAATATGGGTCCTGTACCTTCAAAATGAAGTGCACCAACCTGCACGTCTGCCAGCACTTCTTGCAAGGGGACTGCAAGTTTGGCGCTGGTTGCAAGAGGTGCCACAGATTTGACCTGAACGCTCGTAATATTCTGTCCGGCAGAGGCCTCAGTGCAGACAACACCTGCATCCTGCATGACATTTATAAGAACAGGTACAGGATTGACACCTGTGTTGAGAAAACGGAAGGAAAGACACAGCGTTCGAGGGAACCGTCTTTAAGCTCCACTACCGATGTGGACAGTAATGAAATCTGCCTGTTTTTCCTCCGTAAACACTGCAGTTTCAAAGAGAAGTGCATCCGTGTTCATTTCCATCTGCCATACAAGTGGGAGGTCTTAGACAGAGATGGGTTGACCTGGAAAGAACTTCCCCAAATGGAAGATATTGAAAAGGCCTACTGTAACCCAGAAAACACAACAAGTAATGGATCCCCAGCAGTGAATTTCCTCACCATGACCTGCAGATCAGCTCAAGTCAGGCGCCTCTCCACTGCCTCCTCCGTCACCAAACCTCCACATTTCCTCTTCACAACAGAGTGGGTCTGGTACTGGAAGAACGAGCATGGGAAGTGGACTGAGTATGGGCACCAACAGGATGAGAAGGCTGGTGGCTCCATCTCATCTAAAGTCTTGGAGAATGTATATTTAGCAGATTCCGAAAACAATGTTCCCTTCAGCATCGGAGGTCAGCAGTACATTCTCCACTTTAAAGGCATGTATCAGCAAAACcagatatataaaacaaaaagagaggTACAAAGGAGGCCAAGATTTGTTTCTGCACAAGATGTGGAGAGGAAGCTAAAGAGtGGCCCAACAGAGACTACAGCCTCCACTGCGGTTTCTGTCCCAGCTCACTGGGACCAAGGGGCTCTGCCCGACTTCACATACaagCTCATTTCACTGTCAACCTCCTCTGAGGAATTCCGACAGGTAGAAATCCTGTTCAGACGGACTATGCTTACAAATAAAATCCACAAGATTCAAAGGATCCAAAATCCCTCTCTCTGGAAAGTGTTTCAGTGgCAAAAAGAACAAATGAAGAAGAGAAACGGAGGGAAGGCTGTGGATGAGCGCTTTCTGTTTCACGGCACAGAACAGTCCCTTATTAGTGCCATTTGTGAGCAGAACTTCGACTGGAGGATCTGTGGCATCCACGGGACACTTTATGGGAAAGGAAGTTACTTTGCCAGAGATGCGTCGTATTCCCACAACTATTCCAAGCCCCAAACCAACAGCAGGATTATGTTTGTGGCCCGGGTCCTGGTTGGGGACTTCATTCAAGGAAACAACAGCTACCTACGCCCTCCTGTCAAGGAAGGCAATGCTGTGTTTTATGACAGCTGTGTCAATTCCATGTCCAATCCTTCTATTTTCGTGATCTTTGAGAAGCACCAGGTCTATCCAGAGTACCTTGTCGAGTACAGTTAAGAGTTCACCACAACCCTAGAATTTCGCAAAGTGGTCACCTCTGCTCGCATCATCTAACCATAGAACATGGTTTCTTGGTCTTTGTCAGAAGTGGCTTCTTAGTTTCACATATGTTTATGCTTTAAAGGTTGATGGTTGTCTCCTTTTCCTGATGCTTGCTAGATTTCATATTCTAATGATCCTTATGAATTTCTTCAGTAGACATATAGAGTAATCAACTGTGGagcaacttttaaaaagattgtttttattgttcatcAAACATAAAATTGCTTTATTCCattatatataactttattCCTTTATACCATTATTCCAGTTGAAGTAAAGCTTATGCACAAAGGAACTCACTATGAAAGGCAGAAACAACCTAATAGTTTTCAATGTTGTCTGATTATTGGGAGATATCGAAAAGAccaataacaaaatgtatacatatttcctTGCACAGGCCAATCTCAAAAGAACATGAGTCATTCTGTATGTTACCACCTGTAGGAAATGTCCTCTATTCTGAATAATGTTCTGTACAAATCCAGTGAACActaagaaagaagaaaaaaaaaaagaaatgctccAGAGCGCATTGTTTACCGCTACAACCCTGAACAAAATTGCatctttttcaatttcaaaaatgcaagggggggaaaaaagtttttgaggAAGTAATACAATTTACTGAGATAAGAAAGAGGGAGGACTGAGGCATTTTGTACTTTTCAGCACCAAAAGGTGGTGGTTTGtggtttttaaataacttttttacaCGGCTAGGCAAACACTTCTGAGCATATATTACACCTTTAGGCCCGTTCGCTTTATTTGCAAAACTACTTTTTTTGATTAACTTTATCAAACAAAGTCTATACCTGACATTCTCAGCTTGGACAAATGAAACTGAAtctcaaattaactttttattggTTTTAAGTATGTATACAGGTAGTTACACTTCCAAATAAAGAGAACTATTATGATCACTTGGTCCAATGCTTCAGTAGAGAAAAGTTTAGGTAATTGtacttaatacaaaaatgctttttacTCTTTGACTGTAGTCTGTAAATAAGTGAATACTTTGTCTTTGGTTTCACTTAAATCCTGCTGTGGTACCACCCCAAATGgtactgtcaatgtaacttttttcatggtaccagagcagggtCGTCTTCTCTGTTTTGATTATTGCATCATTTTCAATTACTATCCTTGATTGTTTTAAGATATTAAAGTCAATAAACTATTATGAATGACACTAATGAAAGAGGTTATAGTATTCTCAAAATTACAGTGTTATTCTTCCCCATATGTTTCTACAGCTGATTAAGTACTGTAGTGTGTTTCGTTTCCTTTGCATAATGAGTATCTCACACCATCAAGACATCTTCTCTGATGCACGGTTTCTGCAGTGCAGTATACTGTGGGCTTTCTCCCTTATAGAGAACACCTATAAGTTGTGTCATTTGTCACATGTATCTATCAattccatatttaattattcatattattcaccAATTGTATGCATGATGCTTTTCACTATGAAGGGAGGAGAGGGCTTCTTCATAGAGCTTGATGTCAGTGATATTAAACAGTTCATATTCCCAAATACATGAGAAGTGTTACAGTTCAcacaattatttgcatttttaaaaatattgactGTGGTTTGG

Function

GO: NA

KEGG:

id description
K15259 PARP7S; poly [ADP-ribose] polymerase 7/11/12/13

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006860 True 3602 mRNA 0.43 12 23303455 23320773

Neighbor

gene id symbol gene type direction distance location
AMCG00006861 NA coding upstream 14119 23284738 ~ 23289336 (+)
AMCG00006857 NA coding upstream 20733 23207193 ~ 23282722 (+)
AMCG00006856 NA coding upstream 146020 23149006 ~ 23157435 (+)
AMCG00006852 mon2 coding upstream 441418 22826983 ~ 22862037 (+)
AMCG00006853 NA coding upstream 486092 22809303 ~ 22817363 (+)
AMCG00006859 NA coding downstream 14313 23335086 ~ 23343567 (+)
AMCG00006858 NA coding downstream 33833 23354606 ~ 23369102 (+)
AMCG00006863 NA coding downstream 76096 23396869 ~ 23402875 (+)
AMCG00006867 hipk2 coding downstream 170237 23491010 ~ 23492095 (+)
AMCG00006872 NA coding downstream 253534 23574307 ~ 23580774 (+)
G112955 LOC105913372 non-coding upstream 344850 22957248 ~ 22958605 (+)
G112954 NA non-coding upstream 347255 22953180 ~ 22956200 (+)
G112940 NA non-coding upstream 422099 22877389 ~ 22881356 (+)
G112938 NA non-coding upstream 438947 22863985 ~ 22864508 (+)
G112868 NA non-coding upstream 620268 22682960 ~ 22683187 (+)
G113075 NA non-coding downstream 259742 23580515 ~ 23597219 (+)
G113090 NA non-coding downstream 400609 23721382 ~ 23721632 (+)
G113159 NA non-coding downstream 755980 24076753 ~ 24288917 (+)
G113224 NA non-coding downstream 1049945 24370718 ~ 24372835 (+)
G113233 NA non-coding downstream 1089284 24410057 ~ 24410304 (+)
AMCG00006829 NA other upstream 1680947 21617632 ~ 21622508 (+)
AMCG00006820 NA other upstream 1998577 21265253 ~ 21304878 (+)
G112600 NA other upstream 2100254 21142865 ~ 21203201 (+)
G112567 NA other upstream 2254417 21048336 ~ 21049038 (+)
AMCG00006811 NA other upstream 2358478 20937497 ~ 20944977 (+)
AMCG00006865 hipk2 other downstream 188376 23509149 ~ 23554741 (+)
AMCG00006878 ndufb2,LOC102790702 other downstream 711316 24032089 ~ 24036112 (+)
AMCG00006884 ccnd2a,ccnd2,LOC106573197,LOC106561356,LOC107575166,LOC107686624,LOC107732799 other downstream 983923 24304696 ~ 24335916 (+)
AMCG00006893 ndufa9,LOC107572617,LOC107686627,LOC107732787 other downstream 1188230 24509003 ~ 24587119 (+)
G113369 LOC108442871 other downstream 2297294 25618067 ~ 25618445 (+)

Expression


Co-expression Network