AMCG00006875


Basic Information

Item Value
gene id AMCG00006875
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 23920574 ~ 23925526 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006875
AGCGAGGCTAGGAAAGGCAACATGCGCATCCAGTCACCACGGAGGAGACGCACCTGTCACACACTGGACTCCGCGAGTAAAGACGCACTAGAAATCTTCATTCGTTTGCTGCAAACGCACAGCATGATTTAGCGGTGTCTGGCACGCCTCTGGAGCCGCCCGCGATGCCGGGCCCGTGGAGGGGGCTGCTGTTTCTGCTGGGTTTGCTGTGCGGCGCCGAGGCGAAGTGCTCGCCCACCACTTTCTACAAGAGCTGCTGGATCCGCCGCTTCCCCGGCGTCTTCATCGACGTGCTGCAGTCGCAGGGCCGCGGCGCGCAGCTGCTCGGGGTCTCGCAGGAGGACAGCGCGCTGCGCTGCAGCCGGACCTGCTGCCTGGCCAGCAacgCGTCCTGTAACCTTGCAGTGTTTCACTATGAGACCGTCCAGAGCAGCGTGAATTGCTTTCATCTGAATTGCCCCACGCTAGAGAGCTGCATCCTGAAACGAAGAAGTAATGTAATCTTGTACAACATCACAAAAGGAGTTGATCCTGACTTGCTTGTATTTGGGAAGCACTTCTCCTCCAGCCTCCGACTGTGGCCCAACCTGTCGTCCTCGAAGCTCAACTTCTCCGAGTCCTCCTCCACAGACAAACGGCACTTCCATCGACCTCCCTTCCCATCCTCCCTGACCCAGACCTCGCCTGGCAGCCAGGGCCGGACTCTGCCACAGAGTACCGACTGGGAAACGAGGAGCACTACTTCCACGGCCTTTGTTTCTGTCGCAACACGAGAGACGACCAGCGTTTCAAATGCTGTAGACACTTTCTCAACTGAGGTCGCTGTCGGACATTCGAGAGAGACGTCAACAGCTAACATCTACCCAGGGCCCCCTGTGCATTTCACAGCCGGCTCGCCAGCAACCAAGCCCTACTCCAACATTGCTATCCTGGCCCATTTTGACAGCAGCAAGCAGTACCCCAATGACACCAAAGGTTATGTGAGCAGGAACCACACATCAGAAGACGAGCCTGGTTCTCTGACGCCAGTGTGGGACATCGCCACTGGTACTCTGCTGGTTCCTGTGGTCATCTGCTCCAGCATCCTTCTGGCCTGCTGCTGTACCGTGCTATTTGCGGTCGGTTGGCGAAGCAGGAAGAGGGGTCACTACAGAACATCCTGGAGGGTCAAGAGGGGGTCCATGCGTTTGATAAAGTACGTTATTGTGAGGGAAAGCCTGTAAAGGGAAAGCCAACACTCAGCCCTCCAGCCATTGATACAGAAGCCCTCCTGCTGTCCAAATGATACATCTACAGTCTTCATACCACCCTTATggagcaaaaaatatatattttctttaaagaacaGTGAAGATCTGATTGTATTACTCTTCAAAAGTGAGTTTGCCATTCACTAATGCTTTTCTTTGTGGAATAGCAAGAATCTCAAGACCCAAAATATGACGTCACTAAAGGACTTAATTCCCCTCGATACCTTGACCTAGATCTGAAAGACCACCCCCACCGCAGTGACAAGAGCAGCTTTATGTTCCCATTATAACTCAATCTATAGGGCCTTTCTGTTTCACGCGAAATCCACCTGAAAAGTGTATTCTGCAAACAGACCTTTTCGTCACATGCAAAGGAGCTTGACTTCTCCCTAGAAACGCAAACCAAGAAGGAGAGACTAACTTGTTTTGAGAGCTGTGTGCGATAATTCCAGTGTCATGGATCAAGGAACAAGCCTGGGGATTTTGTTTGAGTGGGGCAGCTTACTGAAActtgagaaaacaaaagtaaaggTATCTGAATGGTTCACAActacttattttaaatgggaGACAAGGTCAAAATTAGCCATCCTTAATGCAGTTCTCTTAGAGAACATTCATTTATCAACAGTTTTCTAGGACAGAGATTTAGTTGGTGAACACATGTAGCAAGCAATTTCATTACTACTGCTGTTATGCCTTTCAATTCTGTCTCATTGTAGAAAAACATTTGTAGGTTTTCAGTTTTGCAAATATAGTGATTTTAAGGAGTCATAATACTATACAAGACTCAAACAACTTAATACAAAGTAAAAGAATACACTAACATGCACATTAATAAAGCATCCTCTTAAATCTAAAAAGCTAATCTAGGCCTACATATACTCTATTTAACTAATACTATATATGTCTATTAGAGTTGTCCAGATTTcctaaaaacttaaatgtagAAAAACCTTAGTAAATCGAAAGAAAGGTATTTAGTTTCTTGTTAGCACTGGTTTTTCACATTATTTGCACATATTATTCCATCGGCACATCTAAAATAACACTTCTCAACAATAGTCAGTGATttggaaaatgaatacatgtcTATGTTCTCTGTACTGGAGAAATGATCACGTTATCTGCTATAGATCACTTTTTTTCCTGTCTGACCTTctgaagtatatatatttaatattgcttctatgtgtttattaaatgaTAAAGGATAAAGTTTCAAAATTCCTTATGGCTTTCAAATGAATGATGAACTTTAAGCTgttatctttaaatgtataatcttTTAAATGGATAGGCCAATAAATAGACACATCTGGAGTTCTAAAAATGATTACTTAATTCCGTTAAAACCTTCAAATCTCGTCTCTTATAATTTTAACTAAGCTCTATCCTAGTTAAGCATTTTCAGCATTTAAACACCACCACTTGCTTTTCACATACTGATTTTGGCTTTTCTAACAGTGCAGAACCATAAAGGGAGGTAAAATGTAATGAACTTTGAAAGAATGCATTACAGATTTAGTTTCCTTCAATGAAAATGCTAAGTATACAAATATCATTTAAGAAattgtttaaaagaataatgaatGTTTGGAGAAATATTgtgaatgaaataaaagaaacatgacTTTGTATTCTTGCCATAATGTTATGCAATTTTAGTTCTAGG

Function

GO: NA

KEGG:

id description
ko00900 Terpenoid backbone biosynthesis
ko04130 SNARE interactions in vesicular transport

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006875 True 2925 mRNA 0.43 3 23920574 23925526

Neighbor

gene id symbol gene type direction distance location
AMCG00006877 NA coding downstream 21005 23899159 ~ 23899569 (-)
AMCG00006876 LOC108429384,LOC108274557,LOC106584451 coding downstream 52327 23849645 ~ 23868247 (-)
AMCG00006873 LOC108429457,LOC107745572,LOC107549582,LOC105913374,LOC107669036 coding downstream 168305 23631039 ~ 23752269 (-)
AMCG00006864 NA coding downstream 543769 23375367 ~ 23376805 (-)
AMCG00006862 si:ch211-125a15.1,LOC107743608,LOC107726025,LOC107580661,LOC107592225,LOC107658829 coding downstream 618400 23287256 ~ 23302174 (-)
AMCG00006880 tead4,LOC105029403,LOC107549581,LOC107669037 coding upstream 6874 23932400 ~ 23970204 (-)
AMCG00006881 NA coding upstream 46590 23972116 ~ 23994354 (-)
AMCG00006882 NA coding upstream 100182 24025708 ~ 24031202 (-)
AMCG00006883 NA coding upstream 115551 24041077 ~ 24057825 (-)
AMCG00006887 NA coding upstream 427911 24353437 ~ 24357780 (-)
G113066 hipk2 non-coding downstream 365835 23547797 ~ 23554739 (-)
G113014 NA non-coding downstream 597423 23322933 ~ 23323151 (-)
G113013 NA non-coding downstream 598803 23321077 ~ 23321771 (-)
G112979 NA non-coding downstream 765671 23153868 ~ 23154903 (-)
G112953 NA non-coding downstream 978904 22941459 ~ 22941670 (-)
G113209 NA non-coding upstream 390206 24315732 ~ 24321862 (-)
G113212 NA non-coding upstream 405561 24331087 ~ 24335914 (-)
G113225 NA non-coding upstream 448166 24373692 ~ 24375929 (-)
G113301 NA non-coding upstream 746262 24671788 ~ 24673498 (-)
G113374 NA non-coding upstream 1466270 25391796 ~ 25392318 (-)
AMCG00006866 NA other downstream 349441 23568155 ~ 23571133 (-)
G113050 NA other downstream 513367 23404175 ~ 23407207 (-)
AMCG00006854 NA other downstream 962268 22953176 ~ 22958306 (-)
AMCG00006841 NA other downstream 1722910 22130495 ~ 22197664 (-)
AMCG00006813 NA other downstream 2956012 20854057 ~ 20964562 (-)
G113530 NA other upstream 2574489 26500015 ~ 26500681 (-)
G113645 ptn,LOC106609498 other upstream 3477074 27402600 ~ 27527348 (-)
G113775 LOC100846954 other upstream 4341736 28267262 ~ 28292598 (-)
G113833 NA other upstream 4785693 28711219 ~ 28812548 (-)

Expression


Co-expression Network