AMCG00006878 (ndufb2,LOC102790702)


Basic Information

Item Value
gene id AMCG00006878
gene name ndufb2,LOC102790702
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 24032089 ~ 24036112 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006878
CTTCGACCTCTCTGGCTGTTCAGACGCGTCCAATGAGAGCGCTTGTTATTGGCAGGCCGGATCTATGTCGGAAGGGAGAAGGTGACATTTTACAAGAGCGGCGCTTTTTCAAGGGTGAAAACCAGGAGAAAAGCAGGAGGAATCGGCGCGAAAGTCCGACAGCATGTCCTCCCTGGTTAGGGCTGCCAGTGTGATCCGAGCCGGGACGCGGCTGCTGCGGAACGGAACCCAGCAAGTGGGCATCAGGAGGGCGGGGGGTGGCGTTCACATCGAGGCCCAGTACAGACAGTACCCTCAGCTCACCAAGAGCCAGAAGTTCCAAGCAGAGCTGCTCAGCGGGTTCATGTGGTTCTGGATCCTGTGGCACTTTTGGCACGACCCCGATGCAGTGTTGGGTCACTTCCCCTGGCCTGATGCCTCTCAGTGGACTGATGAGGAATTAGGAATCCCACCAGAGGAGGAGTAATGTAACCCATGATGATGGTTGAGAagCTATCTCAACCGTGGGACACTTTGCTGCCGAAGGGAGATGAGTGAATCTCTGGTTGCACCATCTGCGAGTCTTCTGTATTGTATATAagataataaatgtgttaatcaCAA
>TU141703
CGCGTCCAATGAGAGCGCTTGTTATTGGCAGGCCGGATCTATGTCGGAAGGGAGAAGGTGACATTTTACAAGAGCGGCGCTTTTTCAAGGGTGAAAACCAGGAGAAAAGCAGGAGGAATCGGCGCGAAAGTCCGACAGCATGTCCTCCCTGGTTAGGGCTGCCAGTGTGATCCGAGCCGGGACGCGGCTGCTGCGGAACGGAACCCAGCAAGTGGGCATCAGGAGGGCGGGGGGTGGCGTTCACATCGAGGCCCAGTACAGACAGTACCCTCAGCTCACCAAGAGCCAGAAGTTCCAAGCAGAGCTGCTCAGCGGGTTCATGTGGTTCTGGATCCTGTGGCACTTTTGGCACGACCCCGATGCAGTGTTGGGTCACTTCCCCTGGCCTGATGCCTCTCAGTGGACTGATGAGGAATTAGGAATCCCACCAGAGGAGGAGTAATGTAACCCATGATGATGGTTGAGAagCTATCTCAACCGTGGGACACTTTGCTGCCGAAGGGAGATGAGTGAATCTCTGGTTGCACCATCTGCGAGTCTTCTGTATTGTATATAagataataaatgtgttaatcaCAACTTGGAA

Function

symbol description
ndufb2 Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial respiratory chain complex I. Orthologous to human NDUFB2 (NADH:ubiquinone oxidoreductase subunit B2).

NR:

description
PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial-like isoform X2

GO:

id name namespace
GO:0005747 mitochondrial respiratory chain complex I cellular_component

KEGG:

id description
K03958 NDUFB2; NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006878 True 603 mRNA 0.54 4 24032089 24036105
TU141703 False 586 TUCP 0.54 4 24032113 24036112

Neighbor

gene id symbol gene type direction distance location
AMCG00006879 NA coding upstream 9446 24018072 ~ 24022643 (+)
AMCG00006874 NA coding upstream 110966 23904764 ~ 23921123 (+)
AMCG00006869 NA coding upstream 403397 23623362 ~ 23628692 (+)
AMCG00006868 NA coding upstream 412696 23613000 ~ 23619393 (+)
AMCG00006871 NA coding upstream 435436 23596096 ~ 23596653 (+)
AMCG00006885 NA coding downstream 301796 24337908 ~ 24347363 (+)
AMCG00006888 NA coding downstream 404319 24440431 ~ 24447563 (+)
AMCG00006892 NA coding downstream 443906 24480018 ~ 24502346 (+)
AMCG00006894 NA coding downstream 614548 24650660 ~ 24653870 (+)
AMCG00006898 NA coding downstream 985018 25021130 ~ 25036473 (+)
G113090 NA non-coding upstream 310457 23721382 ~ 23721632 (+)
G113075 NA non-coding upstream 434870 23580515 ~ 23597219 (+)
G112955 LOC105913372 non-coding upstream 1073484 22957248 ~ 22958605 (+)
G112954 NA non-coding upstream 1075889 22953180 ~ 22956200 (+)
G112940 NA non-coding upstream 1150733 22877389 ~ 22881356 (+)
G113159 NA non-coding downstream 40641 24076753 ~ 24288917 (+)
G113224 NA non-coding downstream 334606 24370718 ~ 24372835 (+)
G113233 NA non-coding downstream 373945 24410057 ~ 24410304 (+)
G113283 NA non-coding downstream 637513 24673625 ~ 24676576 (+)
G113319 NA non-coding downstream 1206453 25242565 ~ 25260402 (+)
AMCG00006865 hipk2 other upstream 477348 23509149 ~ 23554741 (+)
AMCG00006829 NA other upstream 2409581 21617632 ~ 21622508 (+)
AMCG00006820 NA other upstream 2727211 21265253 ~ 21304878 (+)
G112600 NA other upstream 2828888 21142865 ~ 21203201 (+)
G112567 NA other upstream 2983051 21048336 ~ 21049038 (+)
AMCG00006884 ccnd2a,ccnd2,LOC106573197,LOC106561356,LOC107575166,LOC107686624,LOC107732799 other downstream 268584 24304696 ~ 24335916 (+)
AMCG00006893 ndufa9,LOC107572617,LOC107686627,LOC107732787 other downstream 472891 24509003 ~ 24587119 (+)
G113369 LOC108442871 other downstream 1581955 25618067 ~ 25618445 (+)
G113400 NA other downstream 1778943 25815055 ~ 25832942 (+)

Expression


Co-expression Network