AMCG00006880 (tead4,LOC105029403,LOC107549581,LOC107669037)


Basic Information

Item Value
gene id AMCG00006880
gene name tead4,LOC105029403,LOC107549581,LOC107669037
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 23932400 ~ 23970204 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006880
CCGAGCCTCGAGGctcttttccttttcagatCCCGGACCCTCCCCTCGTATCCCCCCCTCCTTCATTACGTGCTGCCGccttcATTCCATACCAGAGCTAATTCCTCAAATTCCAACCTTCCTTGCGCTCCAAACGACACAGGAAGGGGGGACAAAAACTCTGCTATTCCTCTCAAAATCCTCCCCCCAGCCCAGCTCACCTGCCAGCCCCCCGGCGCTCTGCTCCCGCTGAACTTCCAACAGCTTCGGTTTTTGTTCTACAGCGGCACCACGTCGGCAGAGTGGGTCCCAGCCCCCTCCCCCGGGGGGACCAGCGAAGAGCTGAATGAGCCACTGGACAAGCCCCTGGAGAATGACGCTGAGGGAGTGTGGAGCCCCGACATCGAGCAGAGCTTCCAAGAGGCCCTGGCTATCTACCCCCCCTGCGGTCGCCGCAAGATCATCCTCTCCGACGAGGGCAAGATGTACGGACGCAATGAGCTGATAGCAAGATATATCAAGTTACGGACTGGAAAAACACGAACCAGAAAACAGGTGTCCAGTCACATCCAGGTGCTGGCTAGACGGAAGGCCAGAGAAATCCAAGTGAAGCTAAAGGACCAGGCAGCCAAGGACAAGGCTCTCCAAAGCATGGCCACCATGTCCTCTGCCCAGATCATCTCCGCCACTGCCTTCCAGAACAAGATGGCGCTACAGGGCCTCTCCCGGCCAGCCTACCCTGCTGCCACTGGGTTTTGGCATGGAGCTCTACCAGGACAACAAGCTGCCCCTGAAGATGTGAAGCCTTTCACACAACAGAGCTACACCATCCAAGCATCTGCCCTACCTCCAATAACAGGGTATGACAGCACAGTAGGGATCCCCACTTCCCCCCCGGCCCCACCCTGGCAGGGCCGCAGTATAGGGAGCTCCAAACTGCGCATGCTGGAGTTCTCTGCCTTCCTGGAGCATCAGCAAGATCCCGAAACATACAACAAACACCTGTTTGTTCACATTGGACAGTCCAACCCAATCTTCAGCGACCCCTACCTTGAAGCAGTCGACATACGGCAGATTTATGATAAGTTCCCGGAGAAGAAAGGTGGCCTGAAGGAGCTGTTTGAAAAGGGACCCGTCAACGCATTCTTCTTGGTCAAGTTTTGGGCAGACTTGAGCACAAATATTCAGGATGACAGCGGCTCCTTCTACGGCGTGTCCAGTCAGTACGAGAGCTCAGAAAACATGATCATCACATCCTCCACTAAAGTGTGCTCCTTCGGCAAGCAAGTGGTGGAGAAAGTGGAGACGGAGTACGCAAGGTTCGAGGGGGGGCGCTACGTATTTCGGATCCACCGCTCCCCGCTGTGTGAATACATGATCAACTTCATCCACAAACTCAAGCACCTTCCCGAGAAATACATGATGAACAGCGTGGTAACGAACAGAGACACGCAGGAGACACTACTTTGCATTGCCTATGTGTTTGAAGTGTCAACCAGCGAACATGGGGCTCAGCATCACATCTACCGGCTCGTCAAAGACTGAGGCATTATGGGACAGAAATGCTCGCTCTCGGTGCGTCCCTGCTTACCACAACAACCTCCCGCCTTCCTGAATGAAATCCTGTTCTCTTTTTGGAGTGCCTACACATTTCCTGTCATTAACAGGATACATGGACACAAAAATACCATTTCAATGAAGAGGAAGCATTACACACTGTGGAATATTTTGAATTCTCcagtttgtctttctctctctttttttggggTTCTGAGAGCAAACCACAGAAAAATTGCAtggactgttttattttatttgtaatttttagtCTTTGacgtatttgtttttttgtttgtctgtttaattAACGTTTACACGATTGCATGTGAGGATGTATGGTGTTGGGTGCGCCTAGAGAAACGCCGTGTTCTGGAGTGCCAGCCAATAAAAAAAGCAGGAGAAAAGGCCGTTGCTTGTTCCCCATCTCACATCCCACTGGAAGAAACCTGGCCACCACTGGAATTGTCTTCTATACCTTGTACTTTGTTGTATAAACCACTGTCTGCTACCTTTTTGCTCCCACGTCATCTGTTCTGAATTCCATCGCTGTTCCAAAGACCCCGGCATTCTGTTTGACAGACTAAAGACACATTTCAGCTAATTGACGCTTTCCTCTTTTTTAGGAACAAACTAaacataataatgttattttagtcACACTGTCTTTGAACCAATGTTGTTTATTGGCCTTCTATGTTGGGTTGTAAGTGTAGTTGCAGTAGAAAAGACTGTAAAAGTAAAGCAAACTGGATTTGGTAATGCAGTCCGACAGTGCTTTGTATGTCAGTGGCTATTCTGAACcacattgttttctgtgtaattgGTTAGTTCACAATTCATTGGAAATGATCCAGAGACAGACTTCCCTGTCAACATTTCACCAATTTGGTCTCCACAAATAGACTGCCAAGTGGCTCTATCTAAAGCTTTAACTCaaagatttttttccctccttaaTCTGTACCTTTTTAAGAGTGGAGACAATGTATTGGGAATAATGCTTCTAACCTCAGTTTCATGTAAATGTGGATATTTGTCCTGTCCCACCTCTCAGCCTTTTTGAGCGATTTCTACAGGAAAGCTGCTGCCTGGTGTTTCATTTCTCATGTCCCCCAGCTCCTTTCCCCTTACAAAAGTGGCTGCACTGAGAATCATACTATTGTTGGTTTATTTAGAAGGCATACAGTGATGCTTATGACTGAATACCACTGAAGTGACATATTGACTTTTAAGTCTGAAAATTATACCCGAGGTTCAGGTGTTCTGTGAGAAATGGAGCAAGTCCACCAGAGATTAAAcatgtaatgtgttttgttcataTGATGCATTAGCTTGGTAGGCATTTATTAGGTTATTGGGTCTGTCTTTTAGTTTAACTGATGGAAAGAAATGTCTGCAGTTTGAACGATGTAGAATTTAATTAGTTACGGTGTATGTGCGCCTAGTGTCTGGATCAGGTGGGAACAGATTGGTTGTAACCAGTCAGCCTCTGTGTGCTTGTATTGCTAAATACTTATTCGTTTTTTCTCCAgtttcaacaataataattatgtttaatgcTGCCAAAAACATTACATGCAATAGGACTCACAGCAGATTCCTGTAACTTTGTAGATTGGTCTTCTTGCAAACTACTGTTTTTACTTCAATGAATTGTGTGGGAGTTCAATAAGACTTTCTCAAGAGTGAAAGGAAACATATGTACAGATCAGGATCACCACCATATCAAGACTTTTTGGAGACCGaatatatatgcaaatcaaAAGTAACTTTCTGTTTCTCATTTCTCCCACAAGATGTCCCTGTTAAACAATAAACCTGAGGTGAGCTTGTTAACGAATCATAAAGTGTGTAAAAATAGAATTGTGTGAAATAGATACAGTGGGTCTAATAACAGGTCTGTCGGGGCTGAAGCTAATGTCAAGGGAAGccagaaaataagaaagattatttgtatttgaatcttCTAAATGGGGTATAGAGAGTATATGCTGTGACACTACTGACTGGATTCACTAGCAGTACATAAGTCTTTTCAAAGATGTTTGTAACGTGcaacttttattcattttgaatgtcTCTTTGATATCAATTTAACTCATTTTGAaaatacctttattttatttgcagatattGATTCTTCTGGcatctgaaaaacattgtttaatgcATGCATAATATACATATCCAAAGCTGTTTTAAGTGTTTAGGGCCCTGGTATCTGTGTTATTTTCCTTGTCTTAGTAAATGCCTTCAATCTCTTCATCAAATTATCAAAACATCTCGTTATTGTTTCCTCTGAAGGATATTATTTGGAACTGACATAagcagctacagtgagggaaaaaagtatttgatcccctgctgattttgtacgttt

Function

symbol description
tead4 Enables DNA-binding transcription factor activity. Involved in hippo signaling. Located in nucleoplasm.

NR:

description
PREDICTED: transcriptional enhancer factor TEF-3 isoform X2

GO: NA

KEGG:

id description
K09448 TEAD; transcriptional enhancer factor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006880 True 3919 mRNA 0.44 14 23932400 23970204

Neighbor

gene id symbol gene type direction distance location
AMCG00006875 NA coding downstream 6874 23920574 ~ 23925526 (-)
AMCG00006877 NA coding downstream 32831 23899159 ~ 23899569 (-)
AMCG00006876 LOC108429384,LOC108274557,LOC106584451 coding downstream 64153 23849645 ~ 23868247 (-)
AMCG00006873 LOC108429457,LOC107745572,LOC107549582,LOC105913374,LOC107669036 coding downstream 180131 23631039 ~ 23752269 (-)
AMCG00006864 NA coding downstream 555595 23375367 ~ 23376805 (-)
AMCG00006881 NA coding upstream 1912 23972116 ~ 23994354 (-)
AMCG00006882 NA coding upstream 55504 24025708 ~ 24031202 (-)
AMCG00006883 NA coding upstream 70873 24041077 ~ 24057825 (-)
AMCG00006887 NA coding upstream 383233 24353437 ~ 24357780 (-)
AMCG00006886 fgf6,LOC106573196,LOC105018229,LOC106609473 coding upstream 388977 24359181 ~ 24367936 (-)
G113066 hipk2 non-coding downstream 377661 23547797 ~ 23554739 (-)
G113014 NA non-coding downstream 609249 23322933 ~ 23323151 (-)
G113013 NA non-coding downstream 610629 23321077 ~ 23321771 (-)
G112979 NA non-coding downstream 777497 23153868 ~ 23154903 (-)
G112953 NA non-coding downstream 990730 22941459 ~ 22941670 (-)
G113209 NA non-coding upstream 345528 24315732 ~ 24321862 (-)
G113212 NA non-coding upstream 360883 24331087 ~ 24335914 (-)
G113225 NA non-coding upstream 403488 24373692 ~ 24375929 (-)
G113301 NA non-coding upstream 701584 24671788 ~ 24673498 (-)
G113374 NA non-coding upstream 1421592 25391796 ~ 25392318 (-)
AMCG00006866 NA other downstream 361267 23568155 ~ 23571133 (-)
G113050 NA other downstream 525193 23404175 ~ 23407207 (-)
AMCG00006854 NA other downstream 974094 22953176 ~ 22958306 (-)
AMCG00006841 NA other downstream 1734736 22130495 ~ 22197664 (-)
AMCG00006813 NA other downstream 2967838 20854057 ~ 20964562 (-)
G113530 NA other upstream 2529811 26500015 ~ 26500681 (-)
G113645 ptn,LOC106609498 other upstream 3432396 27402600 ~ 27527348 (-)
G113775 LOC100846954 other upstream 4297058 28267262 ~ 28292598 (-)
G113833 NA other upstream 4741015 28711219 ~ 28812548 (-)

Expression


Co-expression Network