AMCG00006881


Basic Information

Item Value
gene id AMCG00006881
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 23972116 ~ 23994354 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006881
TGGGGTCTCTGGAAATAAAAGGCTGACCTATATTTCTCTTTGTTCTCTGCCCACAGGCGTGCGGTGAAGATGCCAGCTGCTAGCATGATGACCGGTGGTAGGGTACTGCTGCTCTGTAGGAATTCTGAAAACGGTATCTACCAATCTATCAACGGGCTTCAGTGTTGCGGATTGAAAATAGGGGAGGTTCCCACTGCGGTGCCTCAGAGCCAGGGCCTGCGGCGGGAAGGGGAGACCAAGAGCCCGCTGACCCCCTTGGACAACCTGAGCGACAGCCCAGGCCGTGCTACCATGCTCAACCAGAAGAGGGCGAGCGCCGAGCCCCGAGCCAACGAGAATGGGCTGGCGGGCAACAACAAACACCCCAAGACCCCAGCTGGCGTCAAAAGCAATGCCAGCATCCGGGACAAAATCTCCCAGTGGGAAGGCAAAAGAGAGCCATCTTTGTCTTCCCCGCTGATGGCGAGAAAGGAGCCTGAAATCGTGAGGAAAAAGGAGACCAAATCAATTGAAGTCCAGAGGGCAGACAGTAAAAGGTTTGTGAGCTGGGATAGACAGGACCTTGGGAAGGAGAATGCAGGAAAAATGGGGGATTTCAGGCCTAAATCCCCAGAGACACCtgtaagggagagggaggagaaatTTGAGAAAGGGAACAGTGGGAAACCAACAGAGGGTACCCAGGATAAGAAAACGGTTTTGACTCACATCAAAAAATTGGAGCAAGCCATGAAGGAAAGCCCCAGCAAGCCCTCGCTGGGGCTACCAGGCAACTATTTCAGCCCCCAGTCCAAGGAAGAGCaggaagaggcagagaggagggCTGCAGAGCCTATCTTTGGGATCCTGGATGTGGTGAGGCCTGGCTCGCGACGGGGACGAGACCAGGAGAATGTGTACACTGAGCCGGGTGCCCCCTCCATTAACCCTCTCCCCAAGCCCCAGCGCACCTTCCAGCACCACACGCACGGGGCAGCGACAGGCTCGGGGGCGGGATTCGGGAAAGGGAAAAGGAACCTACCTCCCCTGCCATCCATCCCCCCACCACCTCTGCCCACCTGCCCCCCACCCAGTGTCAGCAGAAGAGCCTGGGCCGACCGACACAGGGACAATGCCAACAACAGGAAGTCTTACGAGTTTGAGGATGTCCTTCAGTCGTCCGCAGATGGCTGTCGAGTCGATTGGTACGCCCAGTCCAAGCTGTCACTCACACGCACTTTATCAGAGGAGAACGTCTATGAAGACATCTTGGACCTCCCATCGAAGGAGAACCCCTATGAGGATATAGAGATGGAGAATCGCTGTCTTGGGAACAAGAGTCCTGCCCTCGCCCCCTCATCGCCAGCCCCCGACACCCCCACCAAGCTCTCCTCCAAGCCTGGCTTCTTCAGGCAGAACTCGGAGCGCCGTAGTTTCAAGCTGCTGGATCTACGCAAGGTCAACCGTGAAGCAGGCTGGGTGTCACCCTCCAAAATCAGCCCACCGTCTACACCCAGCAGTCCTGACGACACCCCCTGCCTCTCGGGGGACCCCAATAACCGCCGTCGGAGAAAGATCCCAAAGTTGGTGTTGAAGATCAATGGGATTTTTGAGGCCCGCAGAGGGAAGAAACGAATGAAGAGAGTGTCCCAGTCCACCGAGCCTAGCTCCGGAAGAGtAACTGATGAAAACAGCGAGTCCGAAAGCGACACGGAGGAGAAACTGAAAGCCCACAGCCAGCGGCTCGTGTCGGTGCAGTCCATGCTGAAGCAAGCCGGCCGCTATCGCACGCTGGAGAGGGATCTGATGGACCTGCAGGAGCGCCGGCTCTTCGAGTATTTCCTGGTGGTGGCGTTGCACAAGAAGCAGGCCGGGGCGCCGTACCTGCCCGAGGTCACGCAGCAGTTCCCCCTCAAGCTTGAGCGAAGCTTCAAGTTCATGCGGGAGGCAGAGGACCAGCTAAAGGTCATCCCCCAGTTCTGCTTCCCGGATGCCAAGGACTGGGTGCCAGTGGACACATTTCCCAGtgAAACATTCTCATTCGTCTTGACCGGTGAGGATGGGAGCAGGAGGTTTGGATACTGCCGACGCTTACTGCCCAGTGGAAAGGGATGCCGTCTGCCCGAAGTGTACTGTATTGTGAGCCGGTTGGGTTGCTTTGACCTCTTCTCCAAAATCCTGGATGAAGTGGAGAAGCGGAGGGCCAtttctccagccctggtccagCCCTTTATGAGGAGTATAATGGAGGCGCCCTTCCCAGCTCCCGGCAGGACCATCTCTGTGAAGAACTTCCTGCCCGGCTCTGGCACTGAGGTGATTGAACTGTGCCGGCCATCGGACTCGCGACTGGAACATGTGGACTTCGAGTGCCTGTTCTCCTCGCTGCAGCTCCGCATGCTCATCCGAGTCTTTGCCTCCCTGTTGCTGGAGCGGAGAGTCATCTTTACTGCTGACAAGCTGAGCACCCTGTCTCAGTGTTGTCATGCGATGGTGGCCCTGCTCTACCCCTTTGCCTGGCAACACACCTACATCCCAGTGCTGCCGCCCTCCATGATTGACATCGTCTGTACACCCACCCCCTTCATCGTCCTGGTGGTCGACCTTGGAAACAGTCGCTTCCTCCGACAGATGGATGATGAAGACTCAATATTACCCCACAAACTGCAAGCAGCTCTTGAACACGTTCTTGAAAAAAGGAAGGAACTAGCAAGCGAGAAAGGGGAGACGTCAAGTGACTCCAACTCCCTCAGCACAGTGGTGTCAGAGGCCTTTGTGCGTTTCTTCGTGGAGATGGTGGGGCACTACCCCCTGTTCCTGGGCATGGGCGATCGCGAGGATGaggcctcctcctccttccaGCGCGAGGCCTTCCGCAAGGCTGTCTCCTCCAAGAGCCTGCGGCGCTTCCTGGAGGTCTTCATGGAGACGCAGATGTTCACCGGCTTCATCCAGGAGAGAGAGCTGCGGCGACAGGGTCTGCGAGGCCTATTTGAGGTGCGGGCACAGGACTATCTGGATTCCCTTCCAGGCAGTGAGCAAAGTGGAGTCAATAAATTTCTCAAAGGTTTAGGGAGTAAAATGAAGTTCCTCTCCAAAAAATGATGGCCAACAAGGAATAAAGACCtatttatacacacaaagaACATAAGCTCGTCAGAAAACCGTTTATCTGGATTTCTTTTATTGTGATGATTCAGGAGAAAAGACTCCTTCAAAcctatttgaatgtatttatgcaaACATTTCGGGCAATGCAAATGCAGAGCGAAACCCACACCAGGTTTTGGTCGGGGTGGGGTTGGTGTATTAACTGCTGACTGGGACATGAAGGACGGAGACACTGCCCTACTGCAGCCTGGACTGTGATTGTGGCCATGCATTCTGTTGGAGCctctttgttttacacttaaaGAAGTGGGACGGCCTTCAGTTATGTTCTGGGGATGTCACTAGGTAGTTCCCTGTAGTGACGGCCTTAAAAAATGCCATTGTGACCAACATTGTCCAAAAATAACCCAGATCGCATCTTCAGATGGTATCAGCCACCACCACACAGTACTGGTGGTTCTGTTTTCAACGTCTCAGACATGTTGTTCCTGTCTGTTTTCTTCATATGCCACTGCTGTCATGTAACTGAAATGTCTCCCCTGTAAGCACTGCATTTTCCCGAAGCACACAATCGTGACGTCACTGCAGTTTCAAGAGCTTGCACTGAATTCCCACTCACCTTTGACATCAGCCTGGACAGCTGgtgtttttcttaaaaaccACTGCGGGGGAATTAGAACTAAATTGAAGAGGTTACTGCATTGCCAAAGGTGGATCTTGTACAGCAtctctattattttattttttaccttttaatGTAGTACAACTTCTTTTGCAACAGGAggctataatttattttatgtacatttatttgacaaacaCTCTTTCTCAatccactttaaaaaaacaacaacaaccttgtGCTGATTTGTACTGGTTATGTACTGTTTTGCGCTTTTATTTATCAAGTCTGATTGCATATTTGGACAGGAAGACCACTTTGACTAGGCAATGGACTGTACCACTAAAATTGAACAGAAGATTTGTGTAACTAAGTTTTTCTGGGAATGTACCAAATGAAAGAAATTCAAGGAAAAAGCAAAGGAACAAAGATGGATGCGTTTTAAAAACATGGAACAGTTGTAGGAAATGTGGAGTGGATGTCTAACAGAAGGAATCAATGACTTTTGGGCACGTATAAGCTGTGGAGAAAGTGGAATGGGGGTCGCCTCCCAAAGACtcaattttgtaaaaacatgtacaaatgaTTGCCTTTTTTCAAAGACcactagatttgtttttaacttgatTTTGTGGAGCAAAGAAACtg

Function

GO: NA

KEGG:

id description
K20161 DENND2; DENN domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006881 True 4360 mRNA 0.52 19 23972116 23994354

Neighbor

gene id symbol gene type direction distance location
AMCG00006880 tead4,LOC105029403,LOC107549581,LOC107669037 coding downstream 1912 23932400 ~ 23970204 (-)
AMCG00006875 NA coding downstream 46590 23920574 ~ 23925526 (-)
AMCG00006877 NA coding downstream 72547 23899159 ~ 23899569 (-)
AMCG00006876 LOC108429384,LOC108274557,LOC106584451 coding downstream 103869 23849645 ~ 23868247 (-)
AMCG00006873 LOC108429457,LOC107745572,LOC107549582,LOC105913374,LOC107669036 coding downstream 219847 23631039 ~ 23752269 (-)
AMCG00006882 NA coding upstream 31354 24025708 ~ 24031202 (-)
AMCG00006883 NA coding upstream 46723 24041077 ~ 24057825 (-)
AMCG00006887 NA coding upstream 359083 24353437 ~ 24357780 (-)
AMCG00006886 fgf6,LOC106573196,LOC105018229,LOC106609473 coding upstream 364827 24359181 ~ 24367936 (-)
AMCG00006889 LOC107707394 coding upstream 383445 24377799 ~ 24388627 (-)
G113066 hipk2 non-coding downstream 417377 23547797 ~ 23554739 (-)
G113014 NA non-coding downstream 648965 23322933 ~ 23323151 (-)
G113013 NA non-coding downstream 650345 23321077 ~ 23321771 (-)
G112979 NA non-coding downstream 817213 23153868 ~ 23154903 (-)
G112953 NA non-coding downstream 1030446 22941459 ~ 22941670 (-)
G113209 NA non-coding upstream 321378 24315732 ~ 24321862 (-)
G113212 NA non-coding upstream 336733 24331087 ~ 24335914 (-)
G113225 NA non-coding upstream 379338 24373692 ~ 24375929 (-)
G113301 NA non-coding upstream 677434 24671788 ~ 24673498 (-)
G113374 NA non-coding upstream 1397442 25391796 ~ 25392318 (-)
AMCG00006866 NA other downstream 400983 23568155 ~ 23571133 (-)
G113050 NA other downstream 564909 23404175 ~ 23407207 (-)
AMCG00006854 NA other downstream 1013810 22953176 ~ 22958306 (-)
AMCG00006841 NA other downstream 1774452 22130495 ~ 22197664 (-)
AMCG00006813 NA other downstream 3007554 20854057 ~ 20964562 (-)
G113530 NA other upstream 2505661 26500015 ~ 26500681 (-)
G113645 ptn,LOC106609498 other upstream 3408246 27402600 ~ 27527348 (-)
G113775 LOC100846954 other upstream 4272908 28267262 ~ 28292598 (-)
G113833 NA other upstream 4716865 28711219 ~ 28812548 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000127_01323841_01335240 DENND2A coding CI01000127 null 1323460 ~ 1335240 (-)