AMCG00006893 (ndufa9,LOC107572617,LOC107686627,LOC107732787)


Basic Information

Item Value
gene id AMCG00006893
gene name ndufa9,LOC107572617,LOC107686627,LOC107732787
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 24509003 ~ 24587119 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006893
GCTGGTTCTCCAGCTGTTTTATCAGCTGTCCCCATTGTGATTCAGCAGAGGAAGGTCCACTATGCGCTGATCCCTCGAGGCAAAGGGGGACGGTCCTCCTTCAGTGGAATAGCAGCTACAGTTTTTGGAGCGACAGGCTTTCTTGGCAGATATGTGGTCAATCGCCTAGGTCGCATTGGTTCTCAGGTCATAATCCCCCATCGCTGTGACCAGTATGATCTCATGTACCTGAAACCTATGGGAGATCTTGGACAAATCATTTTTTTGGTAGTGGATGTAGCCAAGGCCATTGTTAATGCGATTAAAGACCCTGACTCCAGCGGAAAAACCTTTGCTCTTGCAGGTCCCAGCCGATACCTTCTGCATGACTTGGTGGAGTACCTGTATGCTGTTGCTCACAGGCCATTTGTTCCTTATCCAATTCCACGTCCTTTCTATCATTTGGCTGCAAAGTTCTTCGAGATCAATCCTTTCGAGCCGTGGACGACGCGGGACAAAGTAGACCGGTTTCACACCACAGATCTGAAGTTCCCTGCTCTGCCTGGCTTAGAAGACCTGGGGATTGTGCCATCTTCGGTGGAGCAGAAGGCTATCGAAGTCCTGCGACGTCACCGCCGCTACCGCTGGCTGGAGGCTGAGCTGGGAGAGGCCAAGCCAGCGAAGACCGAGTGGGATCCTCGAGATAAGGAATCCACCAGACGTGCACTGGCTCACTCCAATGTGGTCATCAACCTTGTCGGAAGAGAATGGGAAACGAGGAACTTCCGGTTCGAGGACGTTCACGTTACCATCCCAAAGGAGATTGCCAAAGCTGCAAGAGAGGCTGGCATCCAAAAATTTATCCACATGTCCCACCTCAATGCTGACATTCGTAGCCCCTCTAAATACCTGAGGACCAAGaacaaG
>TU141848
TACAGGATTTCTGCACAGACGGTAGAAAGATGGCGGCTTTGGCCCTCCGCTGTCGTCCTGTGGGTGTCCTTTCTCGGTTTTCCTGTGCTGGTTCTCCAGCTGTTTTATCAGCTGTCCCCATTGTGATTCAGCAGAGGAAGGTCCACTATGCGCTGATCCCTCGAGGCAAAGGGGGACGGTCCTCCTTCAGTGGAATAGCAGCTACAGTTTTTGGAGCGACAGGCTTTCTTGGCAGATATGTGGTCAATCGCCTAGGTCGCATTGGTTCTCAGGTCATAATCCCCCATCGCTGTGACCAGTATGATCTCATGTACCTGAAACCTATGGGAGATCTTGGACAAATCATTTTTTTGGAGTGGGATCCTCGAGATAAGGAATCCACCAGACGTGCACTGGCTCACTCCAATGTGGTCATCAACCTTGTCGGAAGAGAATGGGAAACGAGGAACTTCCGGTTCGAGGACGTTCACGTTACCATCCCAAAGGAGATTGCCAAAGCTGCAAGAGAGGCTGGCATCCAAAAATTTATCCACATGTCCCACCTCAATGCTGACATTCGTAGCCCCTCTAAATACCTGAGGACCAAGGCTGTTGGAGAGGCTGCAGTGAGAGAAGAATTTCCCGATGCAATAATAATGAAGCCGTCTGAAATGTTCGGAAGAGAAGACCGTTTTTTCAACCATTTTGCAAacatgtgctggtt

Function

symbol description
ndufa9 Enables NADH dehydrogenase activity. Involved in circadian rhythm and mitochondrial respiratory chain complex I assembly. Located in mitochondrial matrix; mitochondrial membrane; and nucleoplasm. Part of mitochondrial respiratory chain complex I. Implicated in nuclear type mitochondrial complex I deficiency 26.

NR:

description
PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial-like

GO: NA

KEGG:

id description
K03953 NDUFA9; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006893 True 906 mRNA 0.51 9 24510048 24520705
TU141848 False 703 TUCP 0.49 7 24509003 24587119

Neighbor

gene id symbol gene type direction distance location
AMCG00006892 NA coding upstream 6657 24480018 ~ 24502346 (+)
AMCG00006888 NA coding upstream 61440 24440431 ~ 24447563 (+)
AMCG00006885 NA coding upstream 161640 24337908 ~ 24347363 (+)
AMCG00006879 NA coding upstream 486360 24018072 ~ 24022643 (+)
AMCG00006874 NA coding upstream 587880 23904764 ~ 23921123 (+)
AMCG00006894 NA coding downstream 63541 24650660 ~ 24653870 (+)
AMCG00006898 NA coding downstream 434011 25021130 ~ 25036473 (+)
AMCG00006899 NA coding downstream 453473 25040592 ~ 25041958 (+)
AMCG00006901 NA coding downstream 491268 25078387 ~ 25114339 (+)
AMCG00006903 NA coding downstream 568967 25156086 ~ 25214360 (+)
G113233 NA non-coding upstream 98699 24410057 ~ 24410304 (+)
G113224 NA non-coding upstream 136168 24370718 ~ 24372835 (+)
G113159 NA non-coding upstream 220086 24076753 ~ 24288917 (+)
G113090 NA non-coding upstream 787371 23721382 ~ 23721632 (+)
G113075 NA non-coding upstream 911784 23580515 ~ 23597219 (+)
G113283 NA non-coding downstream 86506 24673625 ~ 24676576 (+)
G113319 NA non-coding downstream 655446 25242565 ~ 25260402 (+)
G113357 NA non-coding downstream 804736 25391855 ~ 25395392 (+)
G113358 NA non-coding downstream 833539 25420658 ~ 25420875 (+)
G113372 NA non-coding downstream 1101616 25688735 ~ 25689111 (+)
AMCG00006884 ccnd2a,ccnd2,LOC106573197,LOC106561356,LOC107575166,LOC107686624,LOC107732799 other upstream 173087 24304696 ~ 24335916 (+)
AMCG00006878 ndufb2,LOC102790702 other upstream 472891 24032089 ~ 24036112 (+)
AMCG00006865 hipk2 other upstream 954262 23509149 ~ 23554741 (+)
AMCG00006829 NA other upstream 2886495 21617632 ~ 21622508 (+)
AMCG00006820 NA other upstream 3204125 21265253 ~ 21304878 (+)
G113369 LOC108442871 other downstream 1030948 25618067 ~ 25618445 (+)
G113400 NA other downstream 1227936 25815055 ~ 25832942 (+)

Expression


Co-expression Network