AMCG00006901


Basic Information

Item Value
gene id AMCG00006901
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 25078387 ~ 25114339 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006901
ATGTTGGCCAATTTGTCGATAGTGGAGAAATACAAGGATGTGGAGCCAGTCATCAAGATTGAGGAGGTGGACGGCCTAGAGCTGGTGAGGAAATTTGCAGAAGAAATGGAGGGCATGTTGGGAAGGAAGATGAAGGCAGTAAAGAGGCTGGTAGAAGCTGCAGAGGATGCTGATCTATACCACGAATTCAATTCGTCGTTGGTTTATGATTATTACAACTCTGTGAAAATTAACGAGAGAGATGAAGCCGGGAACTATGTGGAGCTGGGCAGGGAGTTTGTCCTAGACAACAATGAGCATTTTAATGACCTGCCTGTCAACACCTCCCTGAGTGACATTCAAGTCCCAACCAATGTCTACAACAAAGATCCAGAAATTCTCAATGGGGTCTACATGTCTGAGGCTCTGAATCCTGTCTTTGTGGACAACTTCCAGAGAGACCCTACCCTCACCTGGCAGTACTTTGGCAGTTCCACAGGGTTTTTCAGACTCTACCCagGTATCAAATGGACACCAGATGAGAATGGTGTTATTTCTTTTGACTGCAGGAATCGAAACTGGTACATCCAGGCTGCCACCTCGCCGAAGGACATAGTGATTGTGATAGACATCAGCGGCAGCATGAAGGGTCTAAGGCTGACCATTGCCAAGCACACCATCACCACCATCCTGGACACGCTGGGGGAGAACGACTTTGTCAACATCATTGCGtACAACGATTATGTCCATTACGTGGAGCCGTGCTTCAAAGGGACCCTGGTGCAAGCAGATCTCGACAATCGTGAGCACTTCAAACTGCTGGTGGAGGAGCTTCAAGCCAAGGGGATGGGCAAAGTGAAGAAGGGGATGAAGGAGGCCTTCCGCATCCTGAACCAGTTCAACCAGACAGGCCAAGGGAGCTTGTGTAACCAGGCTATCATGCTTATATCtgatggagcaatggaagactTCAAAACTGTGTTTGAGGATTACAACTGGCCAGATCGAAAGATTCGTGTCTTCACCTACCTAATTGGGCGGGAGGTGACATTTGCTGAAAATGTGAAGTGGATTGCCTGTAATAATAAAGGTTACTACACCCAGATCTCCACCCTGGCCGATGTGCAGGAGAATGTCATGGAGTACCTACATGTCCTGAGTCGGCCCATGGTCATCAACCACGACCATGACATCATCTGGACAGAGGCCTACATGGACAGCGCGCTGTTTGCCTCTCAGGCTCAGAGTTTGCTCCTCATGACCACAGTCGCCATGCCTGTCTTCAGCAAGAAGAATGAAACGGTCAGTAACAACTCCCACTGCCCCCTGCTGTCAGAGAGGTGGGAAGAGCGTTCCCATGGAATCCTCCTGGGGGTTGTGGGTTCTGACGTTCCCCTCCGAGAACTACTAAAACTAGCCCCCCGGTACAAGtacaaagaaggaaagaaactaaagccCAAGCCCAATTATAACAGTGTGGATCTGTCGGAGGTGGAGTGGGAAGACACGGATGAGACCCTGAGAACAGCAATGGTGAGAGGTGAAACTGGAATTCTCTCTATGGATGTGAAAATGACAGTGGAAAAAGGGAAAAGGGTACTGTTCCTGACCAATGACTATTTCTACACAGACATCAATGAGACGCCATTCAGCCTTGGAGTTGTCTTGTCTCAGGGACATGGGGAGTATATCTTCATGGGGAACATCTCTGTGGAGGAAGGTCTTCATGATCTGATGCAGCCGGATCTGACTTTAGCTGATGAGTGgaTCTACTGTGTGACTGACATTGACCCACACCATCGTAAACTCACCCAGCTACAGGCCATCATTCGCTTCCTGACTGGGGAGGAACCAGACCTGGAATGTGATGAGGAACTGGTGCAGGAAGTGCTTTTTGATGCTGTGGTGACTGCCCCTCTGGAAGCATATTGGACAGCCTTGGCACTCAATGAATCAGGCATGGAGGAGGGCATTGAGTCAGCGTTTCTGGGCACCCGCGCTGGGCTGATGCGTATGACCAATTTTGTCGGTCCTGAAAAGAAGCTCAACAGGAAATTCCTGACTAAGTCAGACAAGGAGAGCATATTCACAATGGACCATTTCCCTCTCTGGTACCGCCGTGCTGCTGAGCACACTCCTGGGAGCTTCCTCTATTACATCCCTGAGGAGGACACCAAAGGTACTGTAGCCCTAGTATCCCAGCTCCCAAGAGCTTTCATTCCCAATCCCATCTTCTCCCTCAGATGCTTGCTTCCAGGACATATTCCTGTTTAG

Function

GO: NA

KEGG:

id description
K04861 CACNA2D4; voltage-dependent calcium channel alpha-2/delta-4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006901 True 2253 mRNA 0.49 23 25078387 25114339

Neighbor

gene id symbol gene type direction distance location
AMCG00006899 NA coding upstream 36429 25040592 ~ 25041958 (+)
AMCG00006898 NA coding upstream 41914 25021130 ~ 25036473 (+)
AMCG00006894 NA coding upstream 424517 24650660 ~ 24653870 (+)
AMCG00006892 NA coding upstream 576041 24480018 ~ 24502346 (+)
AMCG00006888 NA coding upstream 630824 24440431 ~ 24447563 (+)
AMCG00006903 NA coding downstream 41747 25156086 ~ 25214360 (+)
AMCG00006905 fbxl14b,LOC106590767,LOC107580311,LOC107656333 coding downstream 222006 25336345 ~ 25340058 (+)
AMCG00006910 NA coding downstream 601488 25715827 ~ 25721613 (+)
AMCG00006916 NA coding downstream 696224 25810563 ~ 25822470 (+)
AMCG00006912 NA coding downstream 715135 25829474 ~ 25836610 (+)
G113283 NA non-coding upstream 401811 24673625 ~ 24676576 (+)
G113233 NA non-coding upstream 668083 24410057 ~ 24410304 (+)
G113224 NA non-coding upstream 705552 24370718 ~ 24372835 (+)
G113159 NA non-coding upstream 789470 24076753 ~ 24288917 (+)
G113090 NA non-coding upstream 1356755 23721382 ~ 23721632 (+)
G113319 NA non-coding downstream 128226 25242565 ~ 25260402 (+)
G113357 NA non-coding downstream 277516 25391855 ~ 25395392 (+)
G113358 NA non-coding downstream 306319 25420658 ~ 25420875 (+)
G113372 NA non-coding downstream 574396 25688735 ~ 25689111 (+)
G113373 NA non-coding downstream 582858 25697197 ~ 25697408 (+)
AMCG00006893 ndufa9,LOC107572617,LOC107686627,LOC107732787 other upstream 491268 24509003 ~ 24587119 (+)
AMCG00006884 ccnd2a,ccnd2,LOC106573197,LOC106561356,LOC107575166,LOC107686624,LOC107732799 other upstream 742471 24304696 ~ 24335916 (+)
AMCG00006878 ndufb2,LOC102790702 other upstream 1042275 24032089 ~ 24036112 (+)
AMCG00006865 hipk2 other upstream 1523646 23509149 ~ 23554741 (+)
AMCG00006829 NA other upstream 3455879 21617632 ~ 21622508 (+)
G113369 LOC108442871 other downstream 503728 25618067 ~ 25618445 (+)
G113400 NA other downstream 700716 25815055 ~ 25832942 (+)

Expression


Co-expression Network