AMCG00006906 (LOC107656325,LOC106609811,LOC107658849,LOC107572035,LOC107726030)


Basic Information

Item Value
gene id AMCG00006906
gene name LOC107656325,LOC106609811,LOC107658849,LOC107572035,LOC107726030
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 25309625 ~ 25313441 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006906
AAGAATCCGTTCAAGTGCCGGACATTGGTTCAAGGGGACATGGAAATCAGGATGATTCAGGGACAGTGTGCCCGGGCTGGGATACATTTGCTGCTGGCAGTGGCCCTGCTCACCTTCAGCTCGCCCTTCCTGGTGGATGCAAACTCGTGGTGGTCTTTAGCAATGAACCCTATTCAGAGACCGGAGATGTACATCATAGGAGCTCAGCCTCTGTGCAGTCAATTGACTGGGCTTTCTCAGGGACAAAGGAAGTTGTGTCAACTTTACAAGGACCATATGGTTTACATAGGCGACGGAGCGAAGACGGGCATCAAGGAATGCCAGTACCAGTTCCGACAGCGGAGGTGGAACTGCAGCACCGTGGACAACACGTCCGTCTTTGGCCCGGTAATACAGATAGGGAGCAGGGAGACGGCGTTCACCTATGCCATCAGCGCGGCGGGGGTGGTGAACGCCATCAGCCGGGCCTGCCGCGAAGGGGAGCTCTCCACCTGCGGGTGCAGCCGGGCCGGGCGGCCCAAGGACCTGCCCCGCGACTGGCTGTGGGGGGGCTGCGGAGACAACGCTGAGTACGGCTACCGCTTCGCCAAAGAGTTCGTCGATGCCCGGGAGCGAGAGAAAAACTACCCCAAGGGCTCTGAGGAGCACGCCCGCACCCTCATGAACCTGCAGAACAATGAGGCAGGGAGGCAG

Function

NR:

description
PREDICTED: ELKS/Rab6-interacting/CAST family member 1-like isoform X2

GO:

id name namespace
GO:0009826 unidimensional cell growth biological_process
GO:0002574 thrombocyte differentiation biological_process
GO:0031018 endocrine pancreas development biological_process
GO:0030182 neuron differentiation biological_process
GO:0045165 cell fate commitment biological_process
GO:0051209 release of sequestered calcium ion into cytosol biological_process
GO:0002062 chondrocyte differentiation biological_process
GO:0001525 angiogenesis biological_process
GO:0010172 embryonic body morphogenesis biological_process
GO:0048840 otolith development biological_process
GO:0048884 neuromast development biological_process
GO:0031101 fin regeneration biological_process
GO:0008591 regulation of Wnt signaling pathway, calcium modulating pathway biological_process
GO:0061053 somite development biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0060030 dorsal convergence biological_process
GO:0005615 extracellular space cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005109 frizzled binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006906 True 693 mRNA 0.59 3 25309625 25313441

Neighbor

gene id symbol gene type direction distance location
AMCG00006904 adipor2,LOC107726009,LOC105910465 coding downstream 51058 25242554 ~ 25258567 (-)
AMCG00006902 NA coding downstream 164284 25131812 ~ 25145341 (-)
AMCG00006900 LOC106609805 coding downstream 340152 24962174 ~ 24969473 (-)
AMCG00006897 LOC107590584,LOC107732972 coding downstream 503733 24784598 ~ 24805892 (-)
AMCG00006896 cacna1c,LOC106515158,LOC101471946 coding downstream 553804 24726492 ~ 24755821 (-)
AMCG00006907 LOC108442871 coding upstream 87269 25400710 ~ 25448412 (-)
AMCG00006908 NA coding upstream 203134 25516575 ~ 25518323 (-)
AMCG00006909 LOC108442871 coding upstream 231872 25545313 ~ 25671743 (-)
AMCG00006913 NA coding upstream 411798 25725239 ~ 25735881 (-)
AMCG00006914 NA coding upstream 433695 25747136 ~ 25778618 (-)
G113301 NA non-coding downstream 636127 24671788 ~ 24673498 (-)
G113225 NA non-coding downstream 933696 24373692 ~ 24375929 (-)
G113212 NA non-coding downstream 973711 24331087 ~ 24335914 (-)
G113209 NA non-coding downstream 987763 24315732 ~ 24321862 (-)
G113066 hipk2 non-coding downstream 1754886 23547797 ~ 23554739 (-)
G113374 NA non-coding upstream 78355 25391796 ~ 25392318 (-)
G113375 NA non-coding upstream 82095 25395536 ~ 25398698 (-)
G113389 NA non-coding upstream 403084 25716525 ~ 25716987 (-)
G113390 NA non-coding upstream 404976 25718417 ~ 25718792 (-)
G113391 NA non-coding upstream 405921 25719362 ~ 25719575 (-)
AMCG00006866 NA other downstream 1738492 23568155 ~ 23571133 (-)
G113050 NA other downstream 1902418 23404175 ~ 23407207 (-)
AMCG00006854 NA other downstream 2351319 22953176 ~ 22958306 (-)
AMCG00006841 NA other downstream 3111961 22130495 ~ 22197664 (-)
AMCG00006813 NA other downstream 4345063 20854057 ~ 20964562 (-)
G113530 NA other upstream 1186574 26500015 ~ 26500681 (-)
G113645 ptn,LOC106609498 other upstream 2089159 27402600 ~ 27527348 (-)
G113775 LOC100846954 other upstream 2953821 28267262 ~ 28292598 (-)
G113833 NA other upstream 3397778 28711219 ~ 28812548 (-)

Expression


Co-expression Network