AMCG00006907 (LOC108442871)


Basic Information

Item Value
gene id AMCG00006907
gene name LOC108442871
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 25400710 ~ 25448412 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006907
ATGAAGGGCGTCGATCTTTGCCTCGCCCACACGTATGACATTCTCCGACTGGCAGCAGTTGGGGGCGGCGGAGATTTAGCGTTGACGCAGAACCGCATGAAGCTGATGGCTGATAACTACGAGGACGACCACCTGAAGGCTTCTTCACATTCTGAGCAGACCAATCACAAACCCTCTCCCGATCAGATCATCCCCCCTCTTTTAGATCTCAACCAGAACCGCAGTAAATTGAAGCTGTACATCGGACACCTGACCGCACTCTGCCAGGAGCGTGACCCCCAGATTCTCCAAGGTTTAGCCCCACCCATCTCTTACCACCACGACGACCGAGCAGCTTGGGAGGACGAGCTGCAGAAGATGAACCTGCAGCAGCTGGAGGCTGAGCTGGAGAAATGCGAGAAGGAGAGCGCAGAGCTGCAGGAATACGCCAATTCTGTGCTGCAGCAGATTGCTGACCACTGCCCGGACATCCTGGAACAGGTCGTCAATGCCCTGGAGGAGTCTTCATGA

Function

NR:

description
PREDICTED: ELKS/Rab6-interacting/CAST family member 1-like isoform X7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006907 True 510 mRNA 0.55 4 25400710 25448412

Neighbor

gene id symbol gene type direction distance location
AMCG00006906 LOC107656325,LOC106609811,LOC107658849,LOC107572035,LOC107726030 coding downstream 87269 25309625 ~ 25313441 (-)
AMCG00006904 adipor2,LOC107726009,LOC105910465 coding downstream 142143 25242554 ~ 25258567 (-)
AMCG00006902 NA coding downstream 255369 25131812 ~ 25145341 (-)
AMCG00006900 LOC106609805 coding downstream 431237 24962174 ~ 24969473 (-)
AMCG00006897 LOC107590584,LOC107732972 coding downstream 594818 24784598 ~ 24805892 (-)
AMCG00006908 NA coding upstream 68163 25516575 ~ 25518323 (-)
AMCG00006909 LOC108442871 coding upstream 96901 25545313 ~ 25671743 (-)
AMCG00006913 NA coding upstream 276827 25725239 ~ 25735881 (-)
AMCG00006914 NA coding upstream 298724 25747136 ~ 25778618 (-)
AMCG00006915 atp6v1e1,LOC107085735,LOC100708725,LOC102197685,LOC102784574,LOC101477634,LOC106514808,LOC106914460 coding upstream 390343 25838755 ~ 25847485 (-)
G113375 NA non-coding downstream 2012 25395536 ~ 25398698 (-)
G113374 NA non-coding downstream 8392 25391796 ~ 25392318 (-)
G113301 NA non-coding downstream 727212 24671788 ~ 24673498 (-)
G113225 NA non-coding downstream 1024781 24373692 ~ 24375929 (-)
G113212 NA non-coding downstream 1064796 24331087 ~ 24335914 (-)
G113389 NA non-coding upstream 268113 25716525 ~ 25716987 (-)
G113390 NA non-coding upstream 270005 25718417 ~ 25718792 (-)
G113391 NA non-coding upstream 270950 25719362 ~ 25719575 (-)
G113393 NA non-coding upstream 290142 25738554 ~ 25738867 (-)
G113395 NA non-coding upstream 292656 25741068 ~ 25745985 (-)
AMCG00006866 NA other downstream 1829577 23568155 ~ 23571133 (-)
G113050 NA other downstream 1993503 23404175 ~ 23407207 (-)
AMCG00006854 NA other downstream 2442404 22953176 ~ 22958306 (-)
AMCG00006841 NA other downstream 3203046 22130495 ~ 22197664 (-)
AMCG00006813 NA other downstream 4436148 20854057 ~ 20964562 (-)
G113530 NA other upstream 1051603 26500015 ~ 26500681 (-)
G113645 ptn,LOC106609498 other upstream 1954188 27402600 ~ 27527348 (-)
G113775 LOC100846954 other upstream 2818850 28267262 ~ 28292598 (-)
G113833 NA other upstream 3262807 28711219 ~ 28812548 (-)

Expression


Co-expression Network