AMCG00006909 (LOC108442871)


Basic Information

Item Value
gene id AMCG00006909
gene name LOC108442871
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 25545313 ~ 25671743 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006909
ATGTACGGCAGTGCCCGCTCGGTTGGGAAGATGGACggcagcagcagtggcagcaGTCAGAGCCCCGGCCGATCGCCCCGTCTACCACGCTCGCCCCGGCTGGGCCACCGGCGGACCAACAGTACGGGAGGCAGCTCGGGCAGTAGTGCAGGCGGAGGCAGCGGGAAGACACTCTCCATGGAGAACATCCAGTCGCTGAACGCTGCCTATGCCACCTCAGGGCCCATGTACCTGAGCGACCACGAGAGCGTGGGGGCCGACCTGCCCAAGAGCACCATGACGCTGGGCCGATCCGGGGGGCGCCTCCCTTATGGGGTGCGTATGACGGCCATGGGTAGCAGCCCTAATATCGCCACCAACAGCGGAGTGGCCAGTGACACCATCGCCTTCGGGGACCACCACCTGCCGGCCGTCAGCATGGCGTCCACTGTGCCACACTCATTGCGCCAGGCGCGGGACAACACCATCATGGACCTGCAAGCCCAGCTCAAGGAAGTACTGCGGGAGAACGAGCTGCTGCGCAAGGAGGTGGACATCAAGGAGAGCAAGCTGAGCTCCTCCATGAACAGCATCAAGACTTTCTGGAGCCCGGAGCTGAAGAAGGAGCGCGCCCTGCGCAAGGACGAGGTCTCCAAGATCGCCGTGTGGAAGGAGCAGTACCGGGTCATCACAGATGAGAGTCAGgattCTAACAGTAAACTGTGTATGCACCTGCAGATGACCATCCAAGCGCTCCAGGATGAGCTGCGCATACAGCGCGACCTCAACCAGCTCTTCCAGCAGGACAGCAGCAGCCGGCCCAGTGAGCCCCTGGCCTCCGAGCTGACGGAGGAGAACTTCCAACGGCTGCATAGCGAGCACGAGCGCCAGGCCAAGGAGCTCTTCCTGCTGCGCAAGACACTGGAGGAGATGGAGCTGCGCATCGACACCCAGAAGCAGACTCTGAGCGCCCGTGACGAGTCCATCAAGAAGCTGCTGGAGATGCTGCAGAGCAAGGGGCTGTCGGCCAAGGCCAGTGAGGAAGACCACGAGCGCACCCGCCGCCTGGCCGAGGCTGAGATGCATGTCCACCACCTGGAGAGCCTGCTAGACCAGAAGGATAAGGAGACTGCGGCCTTGCGGGAGGAGCTTCACCGCCGCTATGAAGGGGCCCCTGAATCTGCCAAGACCAAGGCTCTGCAGACGGTCATTGAGATGAAGGACTCGAAGATCAACTCTCTGGAGCGCGGCCTGCGAGACATGGAGGATGAGATTCAGATGCTAAAGTCCAATGGAGCCCTTAGCACAGAGGAGCGGGAGGAAGAGATGAAACAGATGGAGGTCTACCGCAGCCATTCAAAGTTCATGAAGAATAAGATCGACCAGGTGAAGCAGGAGCTCTCTCGCAAGGATACGGAGCTGATGGGCCTGCAGACAAAGTTGGAGACCCTGACCAACCAGTTCTCTGACAGCAAGCAGCACATCGAGGTCCTGAAGGAGTCCCTCACCGCCAAGGAGCAGAGAGCCGCCATCCTGCAGACTGAGGTTGATGCCCTGCGTCTGCGTCTGGAGGAGAAGGAGACCATGCTGAACAAGAAGACCAAGCAGATCCAGGAGATGGCGGAGGAGAAGGGGACACTCAACGGGGAGATCCATGACCTCAAGGACATGCTGGACGTCAAGGAGCGCAAAGTCAATGTCCTGCAGAAGAAGATTGAAAACCTTCAGGAGCAGCTGCGGGACAAGGAGAAGCAGATGAGCAGCCTCAAGGAGCGGGTGAAGTCCCTGCAGGCCGACACCTCCAACACTGACACAGCCCTCACCACACTGGAGGAGGCCCTGGCAGAGAAGGAGCGCATCATCGAGCGTCTGAAGGACCAGCGAGACCGAGACGAGCGTGAGAAGACGGAGGAGCTCGACAGCAACAAGAAGGAGCTGAAGGAGCTGAAGGAGAAGCTCAGCCTGCTGCAGGGAGATCTGTCTGATAGGGAGACATCTCTGTTGGACCTGAAGGAACACGCGTCCTCCCTGGCTTCCTCTGGTCTGAAGAAAGACTCTAAGCTGAAGAGTCTGGAGATTGCCCTGGAGCAGAAGAAGGAAGAGTGCatcaaaatggaaaaccaaCTCAAGAAGGCCCAGGATGCGGCCATGGAGGCGAGGGCAAGCACAGAACTGACGGAGCGCATCCAGACTCTAGAGAAGGAAGTGGGGCGGCACCGTGAGGACGCCACCAAGGCCCAGGCCGAGGTGGACCGCCTGCTGGAGATCCTGCGTGAGATGGAGAATGAGAAGAATGACAAGGACAAGAAAATCGCGGAGCTGGAGAGAAAGCCGGCCTCTCTCTCCGCTcggcagcaggagcagcagcaagTGTCAGTCCCTGTGCCACAGCACATGGGGGGGTTTGTGTGGGACCTCTTGGgaaaACAAATGAAGGACCAGACCAAGAAGGTGGCCAACCTGAAGCACAAGGAGCAggtggagaagaagaagaatgctCAGCTGATGGAAGAGGCTCGCAAAAGAGAGGACAACATAAGTGAGAATTCCCAGCAGCTCCAGctgGGGAAAGCTGTGACTTTCATGCAATGA

Function

NR:

description
PREDICTED: ELKS/Rab6-interacting/CAST family member 1-like isoform X10

GO: NA

KEGG:

id description
K16072 ERC1, CAST2, ELKS; ELKS/RAB6-interacting/CAST family member 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006909 True 2571 mRNA 0.59 14 25545313 25671743

Neighbor

gene id symbol gene type direction distance location
AMCG00006908 NA coding downstream 26990 25516575 ~ 25518323 (-)
AMCG00006907 LOC108442871 coding downstream 96901 25400710 ~ 25448412 (-)
AMCG00006906 LOC107656325,LOC106609811,LOC107658849,LOC107572035,LOC107726030 coding downstream 231872 25309625 ~ 25313441 (-)
AMCG00006904 adipor2,LOC107726009,LOC105910465 coding downstream 286746 25242554 ~ 25258567 (-)
AMCG00006902 NA coding downstream 399972 25131812 ~ 25145341 (-)
AMCG00006913 NA coding upstream 53496 25725239 ~ 25735881 (-)
AMCG00006914 NA coding upstream 75393 25747136 ~ 25778618 (-)
AMCG00006915 atp6v1e1,LOC107085735,LOC100708725,LOC102197685,LOC102784574,LOC101477634,LOC106514808,LOC106914460 coding upstream 167012 25838755 ~ 25847485 (-)
AMCG00006920 NA coding upstream 216514 25888257 ~ 25893080 (-)
AMCG00006919 NA coding upstream 227808 25899551 ~ 25911582 (-)
G113375 NA non-coding downstream 146615 25395536 ~ 25398698 (-)
G113374 NA non-coding downstream 152995 25391796 ~ 25392318 (-)
G113301 NA non-coding downstream 871815 24671788 ~ 24673498 (-)
G113225 NA non-coding downstream 1169384 24373692 ~ 24375929 (-)
G113212 NA non-coding downstream 1209399 24331087 ~ 24335914 (-)
G113389 NA non-coding upstream 44782 25716525 ~ 25716987 (-)
G113390 NA non-coding upstream 46674 25718417 ~ 25718792 (-)
G113391 NA non-coding upstream 47619 25719362 ~ 25719575 (-)
G113393 NA non-coding upstream 66811 25738554 ~ 25738867 (-)
G113395 NA non-coding upstream 69325 25741068 ~ 25745985 (-)
AMCG00006866 NA other downstream 1974180 23568155 ~ 23571133 (-)
G113050 NA other downstream 2138106 23404175 ~ 23407207 (-)
AMCG00006854 NA other downstream 2587007 22953176 ~ 22958306 (-)
AMCG00006841 NA other downstream 3347649 22130495 ~ 22197664 (-)
AMCG00006813 NA other downstream 4580751 20854057 ~ 20964562 (-)
G113530 NA other upstream 828272 26500015 ~ 26500681 (-)
G113645 ptn,LOC106609498 other upstream 1730857 27402600 ~ 27527348 (-)
G113775 LOC100846954 other upstream 2595519 28267262 ~ 28292598 (-)
G113833 NA other upstream 3039476 28711219 ~ 28812548 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G441790 NA non-coding NC_048569.1 CM023223.2 77169450 ~ 77169810 (-)