AMCG00006915 (atp6v1e1,LOC107085735,LOC100708725,LOC102197685,LOC102784574,LOC101477634,LOC106514808,LOC106914460)


Basic Information

Item Value
gene id AMCG00006915
gene name atp6v1e1,LOC107085735,LOC100708725,LOC102197685,LOC102784574,LOC101477634,LOC106514808,LOC106914460
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 25838755 ~ 25847485 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006915
tttaggtttatattaaagtgtaataaataatacaaacaaaaacataaaataaataacaataatgattataatatatGTTGTGTATATTCAGACCGGAAGCCTTTCACATTCACATGACAGGACGGCTCAGTGCGGGAGGATCAGCTGATCAGTCCGGGACATTTTTTTCGTGACTGCGGCAGAGGAGAAGAGGCTCGGCTGTCATTCATAACTAGTATagcaaataaacataaaattaatcaaatctgtTAGAAAACCACAAAGGAATAttttaccttttgaaaaaaaatataagttACGTTTGTATCTTCAGTAATTGCATCTAAAACCCTCTTTTAACCGCAAACATGGCGTTAAGCGATGCAGATGTACAGAAGCAGATCAAACACATGATGGCCTTCATTGAGCAGGAGGCCAATGAGAAGGCTGAAGAGATTGATGCCAAGGCCGAGGAAGAGTTCAACATCGAGAAAGGTCGTCTCGTTCAGACTCAGAGGCTGAAGATCATGGAGTATTATGAGAAAAAGGAGAAGCAGATTGAGCAGCAGAAGAAAATTCAGATGTCCAACCTGATGAACCAAGCCAGGCTGAAAGTCCTAAGGGCCCGAGACGACTTGATTTCAGATCTGTTGAATGAGGCCAGACAGAGGTTGGGGAAGATTGCCAAGGACCCAGCCAGGTACCAGAGTTTAATGGAGGGACTGGTGATGCAGGGCTTTTATCAGCTCTTGGAGACTAAAGTGACTATCTGCTGCCGTAAACAGGACGTCCCCTTGGTGAAGGCTGCTATACAGAAGAATATTCCCATCTACAAGGCTGCGGTTAAGAAAGACATTGACGTGCGCATTGACCAGGACAACTTCCTGCCGGCAGAAATCTCTGGAGGTATAGAGCTCTACAATTCAGACCGAAAGATTAAAGTTTCCAACACCTTGGAGAGCCGACTGGACCTCATGGCACAGCAGATGATGCCTGAGATCCGAGTGGCCCTCTTTGGTGCCAACCCCAACAGGAAGTTCCTGGATTAATGGGCTCCCTGTACTGTTGCCTGGCGGAGCAGGCTGATGTTTAAAATTGAATGCAATGGAACATGTGAAATGTGTAGAAACCTATTTAAAATTCCATTCTGTGtctgtattgtaaaatgtttgtgctACCAAAAAATTGagaactttttttgtgtgttgtttagtGGTGTATGTGTTTTCTGTTCCAAGGGGAAATAAAGCGGATATTTGAAAtgggaaaggaagaaaacaaagaagcaaacaaaaatgcattaaagttATTTGGGACTGGACTACTTTAAATTGCAATGTTGTTCTGAGCCCAGAAGGGGGAGCCATCTCCCTGTTTCTGAGAATTTGACCTGGAGGAAGTGGTGTGGCAGTTGAGAACAAGAacgttaaaaataatgttgtgaatCTAGACTTCCCTCGGTGTAGTGCTTGTCCAACAGCTGCTTCTTCTACTTCTCATCCTGACTGGGAACCTCTTAGtttagagggaaaaaaatgaaaatgctcattgtatctgaatttaaaatgaaatgtaaaatgcttaCCAGCATATAAGCCAAATGGCTATTTAGAAGTCCATTTATAAAATAGGTTGATCATACGTGATCTTTGTGACAGCAAAAAGctgagaggaaaacaaatcggaatttctctttttaaaaaggtctCTTTAATCTTCTTCAAGTTATCACACACTCCGCTGTGAAGTACTTGAAGACAGTTGCATCTTTTCTAGCTCTGACAATATATGATTTATTCTTACTGTACACAGTTCTTTATGTTCTGCTTTGCTTCAGTGTACAACAAACCAAGTCTTAAAAGAAAATCCTCTACCATGTAGTTGTTAGGcctagtattttatttaatacagtatgAGATGGAAAGTTTGCTGTCTTATTTCATATACCGTACTGTTTGTATatgtgggtttaaaaaaaaaaaaatatatatatatatatatatatatataaaaaaataatgtgtcttgttgattcctttaaaaacatgtttatttttcatggagGGAAGTTTATTCCTAAAACAAAGGAACATACAAATATCTCTGTTCCATTCAGTTCTTTCAGTCTACTTGTTCAAAAGGTGAAGTTTCAGTACGTAAACTGTCTAaggctgttttatttgtttttgagttCCGAGGGATGAATAAActaatatttcaataaatacatgagaaaatgttacatttagtttttttttttt

Function

symbol description
atp6v1e1 Enables ATPase binding activity. Predicted to act upstream of or within proton transmembrane transport. Located in extracellular exosome and lysosomal membrane. Part of vacuolar proton-transporting V-type ATPase, V1 domain. Implicated in autosomal recessive cutis laxa type IIC.

NR:

description
PREDICTED: V-type proton ATPase subunit E 1-like

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0060036 notochord cell vacuolation biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain cellular_component
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG:

id description
K02150 ATPeV1E, ATP6E; V-type H+-transporting ATPase subunit E

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006915 True 2240 mRNA 0.38 9 25838755 25847485

Neighbor

gene id symbol gene type direction distance location
AMCG00006914 NA coding downstream 60137 25747136 ~ 25778618 (-)
AMCG00006913 NA coding downstream 102874 25725239 ~ 25735881 (-)
AMCG00006909 LOC108442871 coding downstream 167012 25545313 ~ 25671743 (-)
AMCG00006908 NA coding downstream 320432 25516575 ~ 25518323 (-)
AMCG00006907 LOC108442871 coding downstream 390343 25400710 ~ 25448412 (-)
AMCG00006920 NA coding upstream 40772 25888257 ~ 25893080 (-)
AMCG00006919 NA coding upstream 52066 25899551 ~ 25911582 (-)
AMCG00006918 NA coding upstream 90222 25937707 ~ 25949127 (-)
AMCG00006922 NA coding upstream 129005 25976490 ~ 25993105 (-)
AMCG00006923 NA coding upstream 245412 26092897 ~ 26105386 (-)
G113395 NA non-coding downstream 92770 25741068 ~ 25745985 (-)
G113393 NA non-coding downstream 99888 25738554 ~ 25738867 (-)
G113391 NA non-coding downstream 119180 25719362 ~ 25719575 (-)
G113390 NA non-coding downstream 119963 25718417 ~ 25718792 (-)
G113389 NA non-coding downstream 121768 25716525 ~ 25716987 (-)
G113431 NA non-coding upstream 18900 25866385 ~ 25867279 (-)
G113468 NA non-coding upstream 148156 25995641 ~ 25995929 (-)
G113479 NA non-coding upstream 153961 26001446 ~ 26038323 (-)
G113573 NA non-coding upstream 1211884 27059369 ~ 27059594 (-)
G113586 NA non-coding upstream 1308050 27155535 ~ 27155857 (-)
AMCG00006866 NA other downstream 2267622 23568155 ~ 23571133 (-)
G113050 NA other downstream 2431548 23404175 ~ 23407207 (-)
AMCG00006854 NA other downstream 2880449 22953176 ~ 22958306 (-)
AMCG00006841 NA other downstream 3641091 22130495 ~ 22197664 (-)
AMCG00006813 NA other downstream 4874193 20854057 ~ 20964562 (-)
G113530 NA other upstream 652530 26500015 ~ 26500681 (-)
G113645 ptn,LOC106609498 other upstream 1555115 27402600 ~ 27527348 (-)
G113775 LOC100846954 other upstream 2419777 28267262 ~ 28292598 (-)
G113833 NA other upstream 2863734 28711219 ~ 28812548 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_023993 atp6v1e1a coding NC_007136.7 CM002909.2 16601839 ~ 16613912 (+)