AMCG00006917 (LOC107596953)


Basic Information

Item Value
gene id AMCG00006917
gene name LOC107596953
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 25912355 ~ 25937570 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006917
ATGGTAGAGCAGTCGGATCGGGCTCCGCTGCTTGACTGGGAAGAAACCCCAGCGGCCGAACCGGTTCCAGCTGCTCCGCCGGAGAAGGCTTCGGAACCGAGCCCAGTCAGCTGCCGGGCGCTGGGCAGCACTGCGCCGGGCACAGGCTGGAGTACGAGCCCCGGAGGTCCGACAGCCTTACCCGCGGTTGTAGCAGCTGTTAGCGGGGAAGCAGACTGCCAAGTAGGTGCGGTTCAGACGGGGCCGTACCGGGATGCACCGAGTCCGGTTAAAGGGAACTCCAATTTCTCCAGCTGGGATAGCGATTTCCCAGTAAAGAAGCAAAGGGCAACAGATTGGGAAGAAAAGGACCAAATCGTGTCTGTTTTCGTGGTGACCTTTGATACCCGATCAGCAATAGAGAAGACTCTGAAAGGATATTTTCGCAAAGGCAGCTACTTTGGTCTGGCCTGCTTTGCCAATATGCCAGTGGAGAGTGAGCTGGAGAGGGGTGCCCGCATGAAGTCTGTGGGTATCCTGTCACCTTCTTACACTCTGCTCTACAGATACATGCATTTCCTGGAGAACCAAGTCAGGCATCAGTTAGAGGTACCGGGGCACTACTCTCAGTTAGAAGCTTTTTAcgaagacaagaaggcagtgTTGGCAGTTGGCAATGGAGCAGCTACCTCCCACCAGCCAGGGCCCTGGATTCCCACAATCAACAGGTGTATGCACCCAGAGATGAAGATAACGCACCCAGCCGGCTGCATGTCCCAGTTTATCAAATTCTTTGGGGAACAAATCATAATCCTGTGGAAGTTTGCATTGCTGCGGAAACGAATACTCAtcttctctcctccccctgTGGGTGTGGTCTGCTACAGAGtgtactgctgctgctgcctggcGAACGTTTCCCTCCTTGGGgttggcatgtctgtgccaGAGTTCAGACCTTTCTTCTACATCAATGTGGCTGACATTGAAGCCCTGGAGACAGAGCTGTCATATGTTGCCTGTACGACAGAAAAAATCTTTGAAGAGAAAAAGGACCTGTATGATGTATACGTGGACAATCAGAATGTAAAGACGCACCACGAGAACCTGCAGCCACTGCTGAGGATAAACAGTGCGGACAGGGACAAGTACAGGAAACTCAGCGAGCAGAGACAGATGCTGCTGTACTCTCAGGAGGTGGATGAGGACTGCTCTTCCAGTGAAGAAGACCTTTTCATCCTGTTTTTCATGGAGCAGAACAACCGGATCTTCCAGACATTGTGGGAGGTGTCTAGCAGCCAGGATAAGACCTTGACAGAGGAGCACGTCCGGAGCATGGGGCTGGACCCCCAGGGAGACCGCAGCTTCCTCATCGACCTGCTGGAAGTGTACGGCATCGACGTGATGCTGGTCATAGACAACCCCTGTTGCCCCTGA

Function

NR:

description
PREDICTED: protein LCHN isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006917 True 1416 mRNA 0.54 9 25912355 25937570

Neighbor

gene id symbol gene type direction distance location
AMCG00006911 NA coding upstream 50490 25851405 ~ 25861865 (+)
AMCG00006912 NA coding upstream 75745 25829474 ~ 25836610 (+)
AMCG00006916 NA coding upstream 89885 25810563 ~ 25822470 (+)
AMCG00006910 NA coding upstream 190742 25715827 ~ 25721613 (+)
AMCG00006905 fbxl14b,LOC106590767,LOC107580311,LOC107656333 coding upstream 572297 25336345 ~ 25340058 (+)
AMCG00006921 nup205 coding downstream 12116 25949686 ~ 25972112 (+)
AMCG00006927 NA coding downstream 258747 26196317 ~ 26203741 (+)
AMCG00006928 NA coding downstream 297282 26234852 ~ 26260252 (+)
AMCG00006930 NA coding downstream 767210 26704780 ~ 26706164 (+)
AMCG00006931 NA coding downstream 832956 26770526 ~ 26770852 (+)
G113409 NA non-coding upstream 17721 25892657 ~ 25894634 (+)
G113394 NA non-coding upstream 166496 25740983 ~ 25745859 (+)
G113383 NA non-coding upstream 187684 25722881 ~ 25724671 (+)
G113373 NA non-coding upstream 214947 25697197 ~ 25697408 (+)
G113372 NA non-coding upstream 223244 25688735 ~ 25689111 (+)
G113467 NA non-coding downstream 58074 25995644 ~ 25995909 (+)
G113469 NA non-coding downstream 58477 25996047 ~ 25996264 (+)
G113534 NA non-coding downstream 617117 26554687 ~ 26554909 (+)
G113537 mtpn,LOC106576424 non-coding downstream 670089 26607659 ~ 26640179 (+)
G113541 NA non-coding downstream 707186 26644756 ~ 26645011 (+)
G113400 NA other upstream 79413 25815055 ~ 25832942 (+)
G113369 LOC108442871 other upstream 293910 25618067 ~ 25618445 (+)
AMCG00006893 ndufa9,LOC107572617,LOC107686627,LOC107732787 other upstream 1325236 24509003 ~ 24587119 (+)
AMCG00006884 ccnd2a,ccnd2,LOC106573197,LOC106561356,LOC107575166,LOC107686624,LOC107732799 other upstream 1576439 24304696 ~ 24335916 (+)
AMCG00006878 ndufb2,LOC102790702 other upstream 1876243 24032089 ~ 24036112 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_03885988_03895027 KIAA1147 coding CI01000013 null 3885988 ~ 3895027 (+)