AMCG00006938


Basic Information

Item Value
gene id AMCG00006938
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 27805483 ~ 27824074 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006938
ATGACATCCCCAGACTACCACAACATTAACATGAAAACTAATGCTTGGAGGAACATTTTGTTCACCATGGATCTACCAGATAGTGGGAGCTGTGTAGCTGCGGGGAGAATGATGGGTGGGTTGAGGGGCAGCTGGAAGGGGACCAGACTTGCTGCTGCCTGCAAAGATACTGGTAAACTCTGCACGGACCACATTGGCTTCAAAGTGTCCAGACAGAGGCAGGGGGTCTACACAAATTCCACTCCCATCTCTGTCAGGAAGGAATACATTGCTGTGTTTTGGGGAAGCAGGGCCCTCATCCACCCCCCCTCCACTGCTCAGCAAGATGAACTTATTGGGTCCTTGTGGACCACACCCCTTCCCTTTGGCAGTCAAAGCTTCAATGACACTCTGAAGGTCTGCAGTCTTAGGGATGACCACCACTTGAGTGTTGGGCATGGAGGGGTGATCCAGGATCCGGATTCCATCTGGGATCTGCTGGGAACTGGAGGCCGGTCATGCGGACTACTGATGCCCCGCAAAAGGAAGAACAGCAACACCTCAAAGAAGCCCCAGCTGCTATTCCAGGAAAATCCGATAAATGGCATCAAACACCACTATGGAACTCCCGTCAAGTCTGCACTGAATCCTAAACATGTTCCGACTGAAGCACCAGGAGGGAACGCAACCTGCCAGTGGGTGACTCCTCAGTTTGACGCAGCCATGCAGTTGCATCTCCCCACCCGAAGGAGAAAGAGACAGCAGTCAGGCAGTTCTGTGCAGCAGAGTGTGCTGGGCAGGAGCTCTCTGTTGATGGCCAAGAAAACCAGTGTTTGCAAGTTCCCGTCCTTGACTTTCAGGAACACTGTTATGTTGCACCACAAGGCTGCTCAACAGTCACTTGCAGTCCcactaaataaaatcaaatgccaGACTGGGAGGCTTTCAGACAACAAGGAGGTTACGGCAGCCAGACCTTGTAAGGAAGCTCACTCAAGTTTAAGTCTGCTTTCAACCACTGAGACCTGTGAGAGCCAGAGAACCCCATTGCCTGAAATGGAAATAGACAGACATGATGTAGCACAGTCTGTGAGAGGCTACAGATCCCCTGATATAGAAAATATCTTCACTCCCCCTGCCTATCACACTCCAGAAGCAGGTGATTGTGGAGTTGGCAATGTTGAATCTGATCTACTAGGTAGGCTCATCTTCTCCCCAACACCAAATGACAGTGAACCCCAAGGGGACACTCTGGTGAAGGACACCCCGGAGCAGGATTATGGGGTAAAGGTaacctggaggaggaggaagggcaTCATGAAATACCTAAAAGACCATGGTCAACTGAGCAGCGGGGAGGCTCTAGTGAGGAGCTAGCTGGAGCTCAGGGGGATAAAGTACTCCAGTTGGTAGGGGTTGCCACCTGACTATATAACCCTTGTATAAAAAGCACAggtttttaaacagtttttgaaaCAGATAAATGTGTAAACTGAGCATTAAGCCTTTGCTACACTTACATTTAATGCTATTGATGCCTATTAATATTCAAtagtgtttaataaaataatgttatcataatacaattaatcaagaaaaccctttttctttcttaatttgcAGTTAGAAACTTTAACATTGGTGTCCATGTTCTGTTTATTAATAGGTCTGTATCATCCTTATTTATACAGACTCAGCCATCAACCTTTACTGACTCACTGTGTGTATGGTCTGATTAGCaaagaattgaaaaataattcagtCAGACGTCAATAATCTCTGGGTAAAATCAAACTATACGTTTAGCAAAGGTTTAATTCTTAACTTATGTGTTAATGTCTTTCACTTGGGGagaactaaaaatataaaactattttatatattttttggagaACAGGTGAAATTAGGTGAATACTTTGATTGGTATAAGTAAATCAAACAATGGGTTTTAGTTCTGCTGTAAAtacttaaatgtttaataaggATGATGCTGATTAGACAAATGTAAGTGacacttacatttaaacaataataaaatattaaacaataaagtGCTAAAAAGCACAGAACTTCAGATTTTCACCCTTATCTTTCCAATGTTTTACAGTACTCCATAGCCATATGAAATTAAGTGTATCTCTGGAAGTGAAAGACCTGAGGAATTGCAGTGATTGACATGTTAAATATActttaagtttaaattaattgtcaGTGGGGTATTAAGAACACATCATACAACATAGTGATTGAATGCTCTGCAGTGTATTGAAAAATACAGCAGATATGATCATGTTGTAGACCTCCCCAAACcaatttgtactgtatttgtaagagggttgaaataaaataaaatgtatttccaaatgAC

Function

GO:

id name namespace
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
ko03040 Spliceosome
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway
ko04110 Cell cycle

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006938 True 2347 mRNA 0.43 5 27805483 27824074

Neighbor

gene id symbol gene type direction distance location
AMCG00006934 NA coding downstream 128283 27668786 ~ 27677200 (-)
AMCG00006935 NA coding downstream 155564 27637220 ~ 27649919 (-)
AMCG00006932 NA coding downstream 496313 27308892 ~ 27309170 (-)
AMCG00006929 mtpn,LOC106576424 coding downstream 1165535 26608543 ~ 26639948 (-)
AMCG00006926 NA coding downstream 1444032 26192389 ~ 26361451 (-)
AMCG00006939 itfg2 coding upstream 140893 27964967 ~ 27970379 (-)
AMCG00006941 NA coding upstream 178428 28002502 ~ 28015328 (-)
AMCG00006940 NA coding upstream 192589 28016663 ~ 28047076 (-)
AMCG00006948 klhl42,LOC106609448,LOC106576288 coding upstream 317183 28141257 ~ 28144216 (-)
AMCG00006949 NA coding upstream 393539 28217613 ~ 28223587 (-)
G113673 NA non-coding downstream 330 27802490 ~ 27805153 (-)
G113667 NA non-coding downstream 5189 27799938 ~ 27800294 (-)
G113631 LOC100846954 non-coding downstream 442453 27270459 ~ 27363030 (-)
G113587 NA non-coding downstream 640085 27165179 ~ 27165398 (-)
G113586 NA non-coding downstream 649626 27155535 ~ 27155857 (-)
G113681 NA non-coding upstream 32037 27856111 ~ 27856461 (-)
G113722 NA non-coding upstream 234287 28058361 ~ 28058567 (-)
G113723 NA non-coding upstream 234645 28058719 ~ 28058931 (-)
G113724 NA non-coding upstream 235054 28059128 ~ 28076291 (-)
G113799 NA non-coding upstream 583332 28407406 ~ 28407839 (-)
G113645 ptn,LOC106609498 other downstream 278135 27402600 ~ 27527348 (-)
G113530 NA other downstream 1304802 26500015 ~ 26500681 (-)
AMCG00006866 NA other downstream 4234350 23568155 ~ 23571133 (-)
G113050 NA other downstream 4398276 23404175 ~ 23407207 (-)
AMCG00006854 NA other downstream 4847177 22953176 ~ 22958306 (-)
G113775 LOC100846954 other upstream 443188 28267262 ~ 28292598 (-)
G113833 NA other upstream 887145 28711219 ~ 28812548 (-)

Expression


Co-expression Network