AMCG00006942


Basic Information

Item Value
gene id AMCG00006942
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 27914300 ~ 27935789 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006942
ATGAAGCAACCCCACAGCATAGTACAGCGGCGCCTCCTAGAGGGCAACATTACGAGGTTGAGGGGGGAAAGCAAAGACTTAGCTGCCAGGGTACGTTCACCTTTggcagaggagaaggaggagcagaAGGTGGAGAGAAAAGCAGCAGAGGAAAGAGGAACTCCAGAGGAGAGCGAGTCCTCAGATGAGAGTGAAGCAGCAAAGGGGAGCTGTGTTCCAGatgagtgggagagagaggtgcCAGAGACAACaaaggagaaagaaataaaagaggagaaaaaggtGACAGAGGAAGAAGTGACTGACAGCGACAGGAAGATGAGAAGACATGTGACAGAGGGGAACACCAAATCTATGGAGGTGCTTAGCATTCATTGCCAGtGCTGTGACAAGGAAGTGAAGGCAAAGATCAACACAGGCCACCGGCATAACTTCATATCACAGAACTTTTGCAGGAAGCTAGGaTTGAGAACCATCCAGGAGATTATGAGCCCTGAACAAACAGTGGGACACAATGTACCTCTTGGTGTCACTGGAACTGTGGAGAATCTGGAACTTCAACTGGGCAAGGAGAAGTTGGAGTGCTCTGCACATGTAGTTGaagatGAGACTTTTGAGCTGTGCCTGGGATTGCAGACTCTGCTAAAgctcaaaTGCTGTCTGGACCTGCATGCAGGTGTACTGAAGCTGAGAGGGACTGAGGAAGAAATCCCTTTCATGGAGAGCCCAGAAAAAGACCACACTGACACCATCTGACCCTGGAAAGCCATTTGCCTCATCTACTCTGAAGTCAACCgtagcaacaaaacaaaagggccttaatttcaaaagcaaagtttcagTCCCTCTTGATCGAGACCACTGGGCTGAATATGTCTTTGTGTCTCCTGAATGTTTTGTGTGGCCAGCTACAATGTTAGTCTTTTTACCTTTTTCCATGCAAGGGTGAGGGCCTCAGTTGAGCTGGCAGAGATGTCTGTCATGAAATCCTCTGATTCAACAGCACCCCCCAATAAAAACCTCTGTAATGGGCAcagaggaacaaaacaaaaacaaaaacaaacatgcaatgtTAAACTCATGTCTTCTTCTCCCTTCCACCTTTCTgtctgaaaaaaacattttttgaaagtTAGTTGCATTAAAACTCCCTCCTTCCAGTATCACCTAGACTTGGAGTGGAACCCATTATTAATACCAGGGAATCCCAAAACACTTGTTTTCTGATATATTGGAATGCATAAATGGTCtagtaaagaaacaaattagagCTAGTGTTTACCCAGAGCTAGATATActattcatttttaacattccAACGCCCATATAGAtaattgagaaaaaaacaaaggccAGTTACATTTTTTGGATTATCTTTTAGCAACTTTCTTTTATATGGGCATGTGCATGCCTGGGTGTTCATATAATTGTGCACATAAGggttttattattcatgtttcaCACGGGAAAAAAGGGATATTGCTGTACTTAGCCTGGCATCCTGGCATCCCTAAATACCAAAAAGGGGCAGCCAAGTAATGACCCCATCTGCTTTCCTCATTCTCCTTCTGAGGTTATTAATCAAACTGTACCAGAAGCTCCTTTTTTTGGTGCCACAGTTTTGGCAAGAAGCTGCGCTGGGAAATGTTGTCTTTTGTATTTGTGCCTGCTTTAATTCTTTACTCTTGTTTCatgaaataatttacattttagtttaatctACTACCACAGAGCACCTGTGCAAAGTCAATATATGTGTCTGTGACTAGTGCTAGTAAGTATCTTTTGACAAGTATTTGCATTTGGTTTGGACAGAGAGCAGTTTTACTTTATGtagatattatattttacagtttatttttcttgttttcaagaaccctactgctttaaaaaaaagcagttcTGGTCAGTGTTAGGTTCAGTTCAGTTgctgtatttactgttttaatttacCATGCTTGTTCTCCAATCAAGGACTTGAAAGACTGAGTCTCTGTGCACTTGCATCCTTTGATATATTATATACCTGAGATCTTGTACTCTCCCTCAATTTCTTCAAATTAACTGTTCACCACAAACAAAtctagatgtttattttttgtgcttactgatcaatattttctctgcCTAATAAAATATGTCTTATGGCTagaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006942 True 2155 mRNA 0.41 6 27914300 27935789

Neighbor

gene id symbol gene type direction distance location
AMCG00006950 NA coding upstream 3902 27909206 ~ 27910398 (+)
AMCG00006937 NA coding upstream 83244 27811185 ~ 27831056 (+)
AMCG00006936 NA coding upstream 286967 27616135 ~ 27627333 (+)
AMCG00006933 NA coding upstream 588580 27324233 ~ 27325720 (+)
AMCG00006931 NA coding upstream 1143448 26770526 ~ 26770852 (+)
AMCG00006943 NA coding downstream 169819 28105608 ~ 28128135 (+)
AMCG00006944 cwf19l1 coding downstream 212049 28147838 ~ 28188827 (+)
AMCG00006947 NA coding downstream 357231 28293020 ~ 28331354 (+)
AMCG00006945 NA coding downstream 396679 28332468 ~ 28364610 (+)
AMCG00006946 NA coding downstream 432335 28368124 ~ 28401071 (+)
G113680 NA non-coding upstream 57838 27856114 ~ 27856462 (+)
G113607 LOC103376870 non-coding upstream 512332 27380923 ~ 27401968 (+)
G113596 LOC100846954,LOC107575789 non-coding upstream 551256 27268971 ~ 27363044 (+)
G113594 NA non-coding upstream 630980 27262231 ~ 27283320 (+)
G113592 NA non-coding upstream 653228 27260610 ~ 27261072 (+)
G113711 NA non-coding downstream 123335 28059124 ~ 28060590 (+)
G113717 LOC107575789 non-coding downstream 142164 28077953 ~ 28078459 (+)
G113741 NA non-coding downstream 202562 28138351 ~ 28138938 (+)
G113743 klhl42,LOC106576288,LOC106609448 non-coding downstream 205494 28141283 ~ 28142251 (+)
G113747 NA non-coding downstream 264753 28200542 ~ 28204108 (+)
G113400 NA other upstream 2081358 25815055 ~ 25832942 (+)
G113369 LOC108442871 other upstream 2295855 25618067 ~ 25618445 (+)
AMCG00006893 ndufa9,LOC107572617,LOC107686627,LOC107732787 other upstream 3327181 24509003 ~ 24587119 (+)
AMCG00006884 ccnd2a,ccnd2,LOC106573197,LOC106561356,LOC107575166,LOC107686624,LOC107732799 other upstream 3578384 24304696 ~ 24335916 (+)
AMCG00006878 ndufb2,LOC102790702 other upstream 3878188 24032089 ~ 24036112 (+)

Expression


Co-expression Network