AMCG00006943


Basic Information

Item Value
gene id AMCG00006943
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 28105608 ~ 28128135 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006943
ATCAGGAGCCCTTTGCTATGCTGAATTGGGTACAACTTTCAAGAAATCTGGGGGGCATTACATTTACCTTATGGAGACGTTAGGCCCCTTGCCAGGGTTCCTGCGACTATGGGTAGAGTTCATAATGATCAGACCCGCTGTGGCATCTGTAGTTGCTTTGGCGTTTGGGTGCTATGTTGTGGAGCCTCTGTTTGCCCCCTGCCCTGCACCCATGGCTCTCACCAGACTGGTCAGCCTTCTTGGAGTGACATTTGTGGTGGCTATAAACTGTTGGAGTGTGAGCTGGGCATCACGCATACAGATCACCCTAACTTTTTTGAAGATGGCAACCTTGCTCTTGATTATCATCCCTGGTATAACTGTCCTTGCCAAAGGAAACAAAGAGAACTTCCAGGATGCCTTTGACACCAGCTCCTTAAACCTTGAAAAAGTGCCACTGGCTTTCTTTTCAGGACTAAACATTCCGCTGTCAATTATCTTCTCCATGGTGATAGTGACTGTGTCTTTCGTGCTGACCAATGTTGCCTACTATGCAGTGATGACGGCAGAGGAAACTTTTGCAGAAAGGACCATCCATGGCTTCTCCTCTGTGATTCCAGTCCTGGTTGCACTGTCCTGTTTGGGGGCTCTAAATGGAGGTTTCTTCGTTGCGCCCAGGATGCTGTTTGTAGGGGCACGGGAGGGGCAGTGGCCAGTGCTCTTCTCCATGATTCACATCCGCCGACAGACCCCCCTGCCTGCGTACCCTTTTGTGTTCATCATGCTTCTGCGAGGGGAGCTCTTCCAGCTCCTCAACTTCTACAGTTTTGCCCGGTGGTTTTTCATCGCTTTAACCACCCTCGGGCTTCTGGTCCACCGCTATAGATTTCCAGACTACCCTCGACCTTTTAAGGTACCCGTGATTATTGTGGTGGCCTTCACAACAGTATGCTTTGCCATTGTTGGTCTCTCCATCTATTCAGACCCCTGGAACACTGGGGTCAGCTGTGCCATCACCCTCTCTGGGGTGCCAGTCTACTACCTAACTGTTCATGAGCAGAGATTACCCAAGAGATGGAGGAAGGCCTTCAaatactTCACCATCAAGCTGCAGATACTGTTGGAAGTTGGGCAGCAGGAAGTAAAGACATTTTGAAGCGACTGAATTATTAATCAACACCTTTCCTTCTGGTCATCTTTTATGTGTGACATTCCAATGATATTTGATTTGAtgagaaaatgttaatatatgcTGAGGCTCAATGACTGTTTTGTGGGTCTTATCAGCAGATGTGGGATTTACATGGATAGTTTCTAgtgaaaattattaaaaggaTTAATTTGTTgaacttttaattgtattaattattgaagATCATTTTGATGTTGAtgtgatattaaatatatacctGGGCTCTAA

Function

GO: NA

KEGG:

id description
K13869 SLC7A11; solute carrier family 7 (L-type amino acid transporter), member 11

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006943 True 1399 mRNA 0.46 10 28105608 28128135

Neighbor

gene id symbol gene type direction distance location
AMCG00006942 NA coding upstream 169819 27914300 ~ 27935789 (+)
AMCG00006950 NA coding upstream 195210 27909206 ~ 27910398 (+)
AMCG00006937 NA coding upstream 274552 27811185 ~ 27831056 (+)
AMCG00006936 NA coding upstream 478275 27616135 ~ 27627333 (+)
AMCG00006933 NA coding upstream 779888 27324233 ~ 27325720 (+)
AMCG00006944 cwf19l1 coding downstream 19703 28147838 ~ 28188827 (+)
AMCG00006947 NA coding downstream 164885 28293020 ~ 28331354 (+)
AMCG00006945 NA coding downstream 204333 28332468 ~ 28364610 (+)
AMCG00006946 NA coding downstream 239989 28368124 ~ 28401071 (+)
AMCG00006951 LOC105898343,LOC106910078,LOC106946326,LOC103151522,LOC107087059 coding downstream 365300 28493435 ~ 28494011 (+)
G113717 LOC107575789 non-coding upstream 27149 28077953 ~ 28078459 (+)
G113711 NA non-coding upstream 45018 28059124 ~ 28060590 (+)
G113680 NA non-coding upstream 249146 27856114 ~ 27856462 (+)
G113607 LOC103376870 non-coding upstream 703640 27380923 ~ 27401968 (+)
G113596 LOC100846954,LOC107575789 non-coding upstream 742564 27268971 ~ 27363044 (+)
G113741 NA non-coding downstream 10216 28138351 ~ 28138938 (+)
G113743 klhl42,LOC106576288,LOC106609448 non-coding downstream 13148 28141283 ~ 28142251 (+)
G113747 NA non-coding downstream 72407 28200542 ~ 28204108 (+)
G113760 NA non-coding downstream 87865 28216000 ~ 28216235 (+)
G113805 LOC100846954 non-coding downstream 490871 28619006 ~ 28619812 (+)
G113400 NA other upstream 2272666 25815055 ~ 25832942 (+)
G113369 LOC108442871 other upstream 2487163 25618067 ~ 25618445 (+)
AMCG00006893 ndufa9,LOC107572617,LOC107686627,LOC107732787 other upstream 3518489 24509003 ~ 24587119 (+)
AMCG00006884 ccnd2a,ccnd2,LOC106573197,LOC106561356,LOC107575166,LOC107686624,LOC107732799 other upstream 3769692 24304696 ~ 24335916 (+)
AMCG00006878 ndufb2,LOC102790702 other upstream 4069496 24032089 ~ 24036112 (+)

Expression


Co-expression Network