AMCG00006953


Basic Information

Item Value
gene id AMCG00006953
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 28626138 ~ 28626413 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006953
ATGTTCCTGAGTGAGGTAGTAGACTGGGTGATCCCAGATATCCCTAAAGACATCAGTGAGCAGATCAAGAAGGAAAAAGTCTTGCTGGTGGATGTCTTTCtcaaggaggagaaggagaagctgCAGCTCATCCAAAATCTTTTCCTTAAAGAACAGAAGGTTAAGGAAAAGCCAGGGAATGGACCACGTCGCTGCCGAGCAGCCAGCTTTAGCCAGTTCAGCCGGGAGCACCGCTGTAGCAATGTGTCCTGCAGCTCTCAGCACACAGATGTGTGA

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04727 GABAergic synapse
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006953 True 276 mRNA 0.50 1 28626138 28626413

Neighbor

gene id symbol gene type direction distance location
AMCG00006952 ano2,LOC104963823,LOC103369069 coding upstream 75678 28546321 ~ 28550460 (+)
AMCG00006951 LOC105898343,LOC106910078,LOC106946326,LOC103151522,LOC107087059 coding upstream 132127 28493435 ~ 28494011 (+)
AMCG00006946 NA coding upstream 225067 28368124 ~ 28401071 (+)
AMCG00006945 NA coding upstream 261528 28332468 ~ 28364610 (+)
AMCG00006947 NA coding upstream 294784 28293020 ~ 28331354 (+)
AMCG00006954 rad52,LOC107753587 coding downstream 223370 28849783 ~ 28855154 (+)
AMCG00006961 ninj2 coding downstream 491164 29117577 ~ 29121806 (+)
AMCG00006963 prr5,LOC100286559,LOC101171242 coding downstream 548489 29174902 ~ 29177235 (+)
AMCG00006962 NA coding downstream 583780 29210193 ~ 29214986 (+)
AMCG00006966 NA coding downstream 607233 29233646 ~ 29235193 (+)
G113805 LOC100846954 non-coding upstream 6326 28619006 ~ 28619812 (+)
G113760 NA non-coding upstream 409903 28216000 ~ 28216235 (+)
G113747 NA non-coding upstream 422030 28200542 ~ 28204108 (+)
G113743 klhl42,LOC106576288,LOC106609448 non-coding upstream 483887 28141283 ~ 28142251 (+)
G113741 NA non-coding upstream 487200 28138351 ~ 28138938 (+)
G113824 NA non-coding downstream 20852 28647265 ~ 28647523 (+)
G113836 NA non-coding downstream 203246 28829659 ~ 28830065 (+)
G113846 NA non-coding downstream 242313 28868726 ~ 28868988 (+)
G113847 NA non-coding downstream 242646 28869059 ~ 28869326 (+)
G113894 NA non-coding downstream 444406 29070819 ~ 29071183 (+)
G113400 NA other upstream 2793196 25815055 ~ 25832942 (+)
G113369 LOC108442871 other upstream 3007693 25618067 ~ 25618445 (+)
AMCG00006893 ndufa9,LOC107572617,LOC107686627,LOC107732787 other upstream 4039019 24509003 ~ 24587119 (+)
AMCG00006884 ccnd2a,ccnd2,LOC106573197,LOC106561356,LOC107575166,LOC107686624,LOC107732799 other upstream 4290222 24304696 ~ 24335916 (+)
AMCG00006878 ndufb2,LOC102790702 other upstream 4590026 24032089 ~ 24036112 (+)

Expression


Co-expression Network