AMCG00006959 (wnk1b)


Basic Information

Item Value
gene id AMCG00006959
gene name wnk1b
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 28931030 ~ 28966524 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006959
GACCGCAAGCTGTCCCGGTCAGAGAGGCAGCGCTTTAAGGAGGAGGCAGGGATGCTGAAGGGGCTCCAGCACCCCAACATTGTCCGCTTCTATGATTCCTGGGAGTCTCCGCTGAAGGGGAAGAAATGCATCGTGCTGGTGACTGAGCTTATGACATCTGGAACGCTGAAGACATATTTGAAGCGCTTCAAGGTCATGAAGATCAAAGTTCTGCGCAGCTGGTGTAGGCAAATCCTGAAAGGCCTGCAGTTCCTGCACACAAGGACCCCTCCCATAATCCATCGGGATCTCAAATGTGACAACATCTTCATCACCGGTCCCACTGGCTCTGTCAAGATCGGAGACCTGGGCTTGGCCACCCTTAAGAGGGCATCCTTTGCAAAGAGTGTCATAGGTACCCCCGAGTTCATGGCCCCTGAGATGTATGAGGAGAAGTACGACGAGTCAGTGGATGTTTATGCCTTTGGGATGTGTATGTTGGAGATGGCTACCTCAGAGTACCCGTACTCAGAGTGTCAGAATGCGGCCCAGATCTACCGCAGAGTCACCAGTGGAGTGAAGCCTGGCAGCTTCGACAAGGTAGCGATACCTGAGGTTAAAGAGATTATTGAAGGATGCATTCGCCAAAACAAGGATGAAAGATACGCCATCAAGGACCTACTGAACCACGCCTTCTTCCAGGAAGAGACAGGGGTGCGTGTGGAGCTAGCAGAGGAAGATGATGGGGAGATGATTGCTATCAAGTTGTGGCTGCGCATTGAAGATGTGAAGAAACTGAAGGGGAAGTACAAGGACAATGAAGCCATTGAGTTCTCCTTTGACCTGCAGAAGGATGTTCCAGAGGATGTGGCACAGGAAATGGTCGAGTCTGGATATGTCTGTGAAGGCGATCACAAGACCATGGCCAAGGCTATCAAGGACCGGGTATCTCTGATCAAACGCAAGCGGGAGCAGCGGCAACTGGTACGCGAGGAGCAGGAGAAGAGAAAGCTGGAGGAGCAGCAAGTAGACCTGCAGCAAGTCCTTGTCCCAGGCTCTTCTCAGACCCCAGGGGTCCCACAGAGCCACTGTACCGGACCCaccactgctgctgctcacATCCAGACAGAGCCAGAGGAACCAGAAGCAGACCAGCACCAGCAGCTGCAGTACCAACAGGCTGGCATCTCTAtggcatCTGATGGGACAGTAGACAGCGGTCAAGGATCCTCGGTCTTCTCAGAGTCTCACCTGGGCAGCCAGCCGGCCAGGTCTTACAGCTCTCCCCCAGAGCAGCCCTTGTCCTCCAGCCAGGTCACTGGATACCCATCTCCCAGCATCCAGCACAGCCAACCCCAACACCAACAAcagccgcagcagcagcagcagcagcttggaGGTTATCAACAGCCGGTTTTG

Function

symbol description
wnk1b Predicted to enable chloride channel inhibitor activity; potassium channel inhibitor activity; and protein serine/threonine kinase activity. Acts upstream of or within angiogenesis and posterior lateral line neuromast development. Predicted to be active in cytosol. Is expressed in several structures, including midbrain neural keel; midbrain neural rod; notochord; posterior lateral line neuromast; and trunk. Human ortholog(s) of this gene implicated in hereditary sensory and autonomic neuropathy type 2A; hereditary sensory neuropathy; hypertension; and pseudohypoaldosteronism. Orthologous to human WNK1 (WNK lysine deficient protein kinase 1).

NR:

description
serine/threonine-protein kinase WNK1 isoform X9

GO: NA

KEGG:

id description
K08867 WNK, PRKWNK; WNK lysine deficient protein kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006959 True 1398 mRNA 0.54 7 28931030 28966524

Neighbor

gene id symbol gene type direction distance location
AMCG00006958 NA coding downstream 24819 28902341 ~ 28906211 (-)
AMCG00006956 NA coding downstream 38537 28880317 ~ 28892493 (-)
AMCG00006957 NA coding downstream 62104 28867902 ~ 28868926 (-)
AMCG00006955 NA coding downstream 119551 28750262 ~ 28811479 (-)
AMCG00006949 NA coding downstream 707443 28217613 ~ 28223587 (-)
AMCG00006960 NA coding upstream 60888 29027412 ~ 29032897 (-)
AMCG00006967 NA coding upstream 202039 29168563 ~ 29257106 (-)
G113876 NA non-coding downstream 63210 28863879 ~ 28867820 (-)
G113823 NA non-coding downstream 289593 28641129 ~ 28641437 (-)
G113799 NA non-coding downstream 523191 28407406 ~ 28407839 (-)
G113724 NA non-coding downstream 854739 28059128 ~ 28076291 (-)
G113723 NA non-coding downstream 872099 28058719 ~ 28058931 (-)
G113905 NA non-coding upstream 105657 29072181 ~ 29074799 (-)
G113833 NA other downstream 118482 28711219 ~ 28812548 (-)
G113775 LOC100846954 other downstream 638432 28267262 ~ 28292598 (-)
G113645 ptn,LOC106609498 other downstream 1403682 27402600 ~ 27527348 (-)
G113530 NA other downstream 2430349 26500015 ~ 26500681 (-)
AMCG00006866 NA other downstream 5359897 23568155 ~ 23571133 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location