AMCG00006962


Basic Information

Item Value
gene id AMCG00006962
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 29210193 ~ 29214986 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006962
ATGACCTTCTTCCTACTTCCCTACAGTAACTCTCGTTCTCATGTCTTACAGGGGGTGCATGAGTCTAAAGGAGTGACTGATGATTATCTGAAGCTGGAATCCCTGATCCAGAGGATGGTCTCTCCTTACCTGGGAACACACGGACTGTTCTCTGGTGACGGGATGGTGACACAGTGCTCCTGTGTCCTGGAAAATCGACTGTTGAGACGCTGCCCCAAGCCAGGGGAGGTGATTGGAAAAAACCCAGTGGTGCGGTCCAAGAGCTACAACAACCCCATGCTGACACCTGTGGCGGAGTACGAAATGGAGGTGGGATCTGCCAATGGGGCAGGCATTCGGCGACACTCTGTTTCCGAGATGACCTCCTGTCTTGAAGAACAGGGCTACTCCAACCTCACCACTATTATGGATGCTGGCTCCAAAGTGTCCATGGCCAAGACCAGTCTATTAGGAGAGCAGGACCTGACTCCAGGAGTAATTTTGCCTTCCCCTCACACACAGCAAGAACAGTTTGATGAACAGGACTTCAGGGCCGGGCAGCCCTCTCCTCCTGAGCTGGTTGAAGAACCATCATCCATCCAAACCTGCTCTTCTAGCCCCGAAACTATAGTGGACCAGATTTTAGAGTCCATGGACTCGGATACAGATGGAATTTTCCTGGATTTCTCGCACTGTTGTTCAGACTCCCCCAGCTACAACAAAGAAGCCAGCAGACAGAGTGTGGTGTAGTGGTGCTCTCAGGCACCTCTACAGCAGTAAAGGACAGGGTGGGGGCGAACACAGTTACTGTGTGACAATCAGCAATGCAGTATTTGATTCCAAGTAGTTTCTTGCAAGATTGCCTGATGATTTTGTAATGTCTTTTTAGCtactttgataaaaaaaaagttgtgtttttaaactgaatgttGGAATTTAATCATTAGATATTCGTGCCAAAATggcacatttcttaaaaaagagaaaaacaatcagaaatcaaaaataattcacCAAAGACACTGtatggaaaacatttgaaatgaagaACAGTTGTAAATATCATCCGTGTGGCCCTGTTATTTTAGATCTTATTTGTTGCTTACTGTCTTATAATTTTTGGTTGGTTTTCATGAAGAATTTTCTGttaactcattattattattgcagataATTGCAAATGGCTTACGAAAGATCCTGACAAACAAACCTGTTTTACCATGCAAAAACATaagggagaagaaaataaatgaaggattAAGAAAAGAGACTGAAGTGAGAGCCCATAAGTGTTGTAGTGACTAAAACGTTGAGTGCTTAAATGCTTTGCCTTGAATGCTTTGTCAGGGGTGTCTGTCCCAGTTCCTTGTTAATTCCAAATCCAGTTAGTTTTACAGGACACTAAGTTACtgatttctaaaaaaaaaaaaaaaaaaaaaattaaacttgaTCACTTGATCAGTGTAAATTCATTagaatatgcatttaaatggtgTCAAACAATGACACTTtgaatactatttatttatttgtttattgtttggtCTCTTTTTTGGTATGCCCTTCTACAGAAAGTGACGAGTTAATTGAatagtatacaaaataaatagaatttgCACTTGCACTTAGCTGGAggttttatattatgttttcagCCAAGCATAAAAACAGCTGTCATCTTCAGCTTTGCATAGGGCGTAACACCCAGGTGTGGAAATCAGGCAGCATCTTACAAACAAAGGGTCTAGGGCCGGCAAACAGGAGCAAAGGAGGTCTGGCAAAAGGCGAGGTCAGAAGAAAGGCAACGGTCAGGCGATCAAGCAAACAGCCTATACTGGGAAATCCGAGAAGACAGGGTAATAGAAACTAGCAAAGGTTAGTGAACAGAGGTTGATCTAGAAAACAGGCTTGAGATTGCTACAGGACATAAACAAAACTTTGCGAAGACTTTGGGAGCAAACTGGAATATACATTTGCGTAAAGGGCAGGTGAAACTGGAAACAGATGTGTGTGAACGGCGACCTCTAGTGGTGACATATGGGAAAGCATTGAGAAATGTTACAACAGCTAAAACTGGGAGATTGTCTATGCAACATAATGAACACACAAGATTCACTTTATATTCATTGTTGACCCAAGCAGGATTGAGCACTTGTACAGTTGGATTAACTGGGCCTGTATTTTCCAAAGCTGGTGAAAGAATCGCTCATGTGTAAGACCAGCTATTTTAATGAACTGTATCAATTGTTGGAGTTGAttgaattattgtaattttttgaggctttttgcaaacattttgtgTGAGTAGATCGGCTGTAAGCATGTTACCGTAACTCTATTAAATATAAGTACTGCCCTTACTCATTCGTAAACCCTTTACCAACTATGGAATACCAGGCTCATTGTGTGTTTAACTGGAGGGTTTGTATCACAGCAAGTAAGCCAGACACTTGTTAACTTGCACAAAGGGAAAATTAACCTGACAAGTCTCAAGATGTGAATTGAGATTTTATGTCTTTTGCATGTGCTTCTGAGATTAAAGTCACAATTATTATGGAGATTTTTAGTGAGGTTTTCAATTAAGTGTAATGCACTTAAAGGAATGTATCCACTGCAGGGAGGGATTTTATGTTTTGCTAAGCAACGATCTAGCCAGGCAGGGCCTAAATATGTGGTTTcatgtcaaatgttttttttaggaGCGTACAGTAAACTTCATATCCAGATATTTTTCCaatgtattaatacacacattttctgtttaaccTGTGCTCCCAGCCCTTTGCTAATTATACAGATCTTGTTCAACTGTGCTCACGACCTGAGCATGTATGTAGACCACTTGAAATCCAGGTCCAATGCAGATGGGTTAATATTTTCCTGCCCATTCCCATTCTGTATGTTCTACCCttaaggaaaaaaagtatttttaaaagcagattttttaCGTTGGTCATTTCTGAGAATCAGAAGAAAGAGTAGCAACTCTAAATAATGTCCTCTGGAGATTGACTCGGGAGCCTCATCTGAAGATTGTATATAGatttcagaagaaaacatgGTACACATATGTGTGAAGGCtggtctgtatatatgtattcattcaatGTATTCAAGCTCTGTTAGTTTCTACAAACAACTGTGccatattaacatattaacgGTTTTTCAACATTCCACCTGGCATTTCAAGGCATGATCAAGACTTTCCTGGCTGAGAATTTCAATGTTTGTGCTTTTGAGTGTCATAAGGAAAAGTAatataatcatttaaattgaaCCATTGAGCTATTGTATGCACTTACTTCTCTAATTCATCAACCCTGAGACTTTCAGTGCTTAGGGCagtctttcaaaatgtcaattcTAGACTTTGCTATaggaaattatacaaaaagatAGCTTAATAATTTCCATTACAATTTAGGAGATGTACAAATACTTATACTACTTACATACAAAAGCAGAACTTTTAAGTAGAATATTGTATCTGCACTATATTACTAAATGTATTAGGATACCAGCCAGACCTCcctgctgctttgtttttttgggaAGGTGGAAGGACTCCCCTGAGGCCTTGGATGAAGTTaaaaaggagaaggaaaagTTAAGCATTATTTGAAGGAAGATGGGTCTTGttgtaaatatgaatgtataatttCTGAGATACATCTGGCATATATCAAACCTTTAGTCTATATGATGACAACCAAATGTCTAACAGACAAGTCTTCTCCAACAGATGTAAAGCaacaaaaggatttttttttttttactgtgttaAATTAGATGCTTCGGATGTACATAAGTTGCCACCATCGAACACTTTTCATAAAGTACTTGTGGTATTGAGGACCATTAAATAACTGCCCTGTTTTCTGTTATGGGAATGagcttaaaatgtcaaaatacaatgcaattactacattttttaatatatctaaATCTACAGTGTGAAAGCACTGACAGTTaaccacattttaattatatttggaGCATTTCAATTCTGTAAGggataatgttacattttatttaaacaatggaaaaaagccatcagtttattcagtttttcattctGGGTAGGAATTGTGATTTAAGAATCAACACATTTATGTTCCTAAGAAATGTGGTCTGTTTAAAgactattaaaagaaaaaataaataaacatctggTTTCACAGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006962 True 4165 mRNA 0.38 2 29210193 29214986

Neighbor

gene id symbol gene type direction distance location
AMCG00006963 prr5,LOC100286559,LOC101171242 coding upstream 32958 29174902 ~ 29177235 (+)
AMCG00006961 ninj2 coding upstream 88387 29117577 ~ 29121806 (+)
AMCG00006954 rad52,LOC107753587 coding upstream 355039 28849783 ~ 28855154 (+)
AMCG00006953 NA coding upstream 583780 28626138 ~ 28626413 (+)
AMCG00006952 ano2,LOC104963823,LOC103369069 coding upstream 659733 28546321 ~ 28550460 (+)
AMCG00006966 NA coding downstream 18660 29233646 ~ 29235193 (+)
AMCG00006964 NA coding downstream 20262 29235248 ~ 29238470 (+)
AMCG00006965 NA coding downstream 25530 29240516 ~ 29248059 (+)
G113894 NA non-coding upstream 139010 29070819 ~ 29071183 (+)
G113847 NA non-coding upstream 340867 28869059 ~ 28869326 (+)
G113846 NA non-coding upstream 341205 28868726 ~ 28868988 (+)
G113836 NA non-coding upstream 380128 28829659 ~ 28830065 (+)
G113824 NA non-coding upstream 562670 28647265 ~ 28647523 (+)
G113925 NA non-coding downstream 22217 29237203 ~ 29240687 (+)
G113955 NA non-coding downstream 111057 29326043 ~ 29326264 (+)
G113400 NA other upstream 3377251 25815055 ~ 25832942 (+)
G113369 LOC108442871 other upstream 3591748 25618067 ~ 25618445 (+)
AMCG00006893 ndufa9,LOC107572617,LOC107686627,LOC107732787 other upstream 4623074 24509003 ~ 24587119 (+)
AMCG00006884 ccnd2a,ccnd2,LOC106573197,LOC106561356,LOC107575166,LOC107686624,LOC107732799 other upstream 4874277 24304696 ~ 24335916 (+)
AMCG00006878 ndufb2,LOC102790702 other upstream 5174081 24032089 ~ 24036112 (+)

Expression


Co-expression Network