G108319


Basic Information

Item Value
gene id G108319
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 774809 ~ 791062 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU135436
GGGTTCATAGGGAACTGTATTAAACTCTTAGTGTGACAGATACAGGAACAGACACACCCGCAGCCTCCAGGACGGGCAGCCCGGCGCCCCTGCGTCGCAGCacagaaattaaactaaacGGAACAGAAAAACCCAACAACATCCGAGCAGTCGGCACGAGTCAAATTCACTCCGGGAGAGTCGAAAAGAGTTATAATGACAATAACAGgactagtagtagtaatagcagTAGCCAAGAAAATCaaagagacaaacaaaacagacaacaacaaaaaaaaatatatatatataattccgTTAGAAGATTCTAGAAGACGCTGAGAATTCCGGGGGAATCCAGGATTTTCCGAGGGACACGGAGAGAGTCAGTGATCCACAGTTATTTAGGCAGTCAATGCAGGGAGAGTCCATTGTTTTGCTGGCTTCGTTTAGGGAGTCAATACGGGTGGGGTCCAGGGAGCCCCAGAGAGAGGCGTGGGAGGCTGTGGGGGGACAGTCCGGGCCCCGGCGGCCCCTCAGTCGGGATCCAGGGGCTCGAAGCAGGGAATCCGTCCTCTCAGTTTTCCtccatttttataaaatatatttgtcttctTTCCCCTCCTTGGCCTCATGGAAAAACCCACATTcgctttcctctctctctcataatcTTCCATCTTTCCTTTATTTGTCCTTCTCCCGACACTTCAGAGCCTTCGTAATTAAAATCGTGGGAGTcaaaatgaagtaaaatataGCTGTGTCTGAAGTCTCTGGATCAGAGGACAGGcggagaggagagggggtggAGGCGCATCCTCATATAGGCTGTCTTTTGTTGTTAAAATGGACAGTCAAGTCACATGACCTCAGACTGCAGTGGCAGGGCTGGACCagacagcacccccccccccgctgcaCTGCCTCTGTTAGGACCTGCACCCAATACATCCAGCCCCATTACCAccccgacacacacacgcacacagggcCCTggaacatacacacacactgtacctcATATACAGCACTTACACCCTGGCTGGAGCAGTGCCCATCACACTGtgcctgtacacacacactggacttGCATTCAGACCCAATACAGTGTACGCAAGTACACAAATACTGGCCACTACACTACAGtcacacagcgctgctccacTCTGGGccctatactacactatactttACTGCAGCCCCCACagtgctgctccagtctgggccctgtATCTGGTATAAACTGTGTAAGTTCAGGGtgtgtactttttcttttcatatgcagacagggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgta
>TU135437
GGGTTCATAGGGAACTGTATTAAACTCTTAGTGTGACAGATACAGGAACAGACACACCCGCAGCCTCCAGGACGGGCAGCCCGGCGCCCCTGCGTCGCAGCacagaaattaaactaaacGGAACAGAAAAACCCAACAACATCCGAGCAGTCGGCACGAGTCAAATTCACTCCGGGAGAGTCGAAAAGAGTTATAATGACAATAACAGgactagtagtagtaatagcagTAGCCAAGAAAATCaaagagacaaacaaaacagacaacaacaaaaaaaaatatatatatataattccgTTAGAAGATTCTAGAAGACGCTGAGAATTCCGGGGGAATCCAGGATTTTCCGAGGGACACGGAGAGAGTCAGTGATCCACAGTTATTTAGGCAGTCAATGCAGGGAGAGTCCATTGTTTTGCTGGCTTCGTTTAGGGAGTCAATACGGGTGGGGTCCAGGGAGCCCCAGAGAGAGGCGTGGGAGGCTGTGGGGGGACAGTCCGGGCCCCGGCGGCCCCTCAGTCGGGATCCAGGGGCTCGAAGCAGGGAATCCGTCCTCTCAGTTTTCCtccatttttataaaatatatttgtcttctTTCCCCTCCTTGGCCTCATGGAAAAACCCACATTcgctttcctctctctctcataatcTTCCATCTTTCCTTTATTTGTCCTTCTCCCGACACTTCAGAGCCTTCGTAATTAAAATCGTGGGAGTcaaaatgaagtaaaatataGCTGTGTCTGAAGTCTCTGGATCAGAGGACAGGcggagaggagagggggtggAGGCGCATCCTCATATAGGCTGTCTTTTGTTGTTAAAATGGACAGTCAAGTCACATGACCTCAGACTGCAGTGGCAGGGCTGGACCagacagcacccccccccccgctgcaCTGCCTCTGTTAGGACCTGCACCCAATACATCCAGCCCCATTACCAccccgacacacacacgcacacagggcCCTggaacatacacacacactgtacctcATATACAGCACTTACACCCTGGCTGGAGCAGTGCCCATCACACTGtgcctgtacacacacactggacttGCATTCAGACCCAATACAGTGTACGCAAGTACACAAATACTGGCCACTACACTACAGtcacacagcgctgctccacTCTGGGccctatactacactatactttACTGCAGCCCCCACagtgctgctccagtctgggccctgtATCTGGTATAAACTGTGTAAGTTCAGGGtgtgtactttttcttttcatatgcagacagggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135436 False 1313 TUCP 0.50 2 774809 791062
TU135437 True 1315 TUCP 0.50 2 774809 791062

Neighbor

gene id symbol gene type direction distance location
AMCG00006237 NA coding upstream 140995 610467 ~ 633814 (+)
AMCG00006234 NA coding upstream 198552 569404 ~ 576257 (+)
AMCG00006233 NA coding upstream 212544 547826 ~ 562265 (+)
AMCG00006235 NA coding upstream 283012 490705 ~ 491797 (+)
AMCG00006224 NA coding upstream 437529 320671 ~ 337280 (+)
AMCG00006252 NA coding downstream 98016 889078 ~ 895444 (+)
AMCG00006250 vps52 coding downstream 105916 896978 ~ 908806 (+)
AMCG00006251 NA coding downstream 133552 924614 ~ 929086 (+)
AMCG00006249 LOC106588375 coding downstream 141097 932159 ~ 946648 (+)
AMCG00006253 NA coding downstream 159860 950922 ~ 959903 (+)
G108318 NA non-coding upstream 770 773659 ~ 774039 (+)
G108314 LOC106569953 non-coding upstream 44623 727877 ~ 730186 (+)
G108312 NA non-coding upstream 65881 708057 ~ 708928 (+)
G108263 NA non-coding upstream 339188 435401 ~ 435621 (+)
G108256 NA non-coding upstream 369469 384397 ~ 405340 (+)
G108496 NA non-coding downstream 142453 933515 ~ 933825 (+)
G108513 NA non-coding downstream 275974 1067036 ~ 1067725 (+)
G108515 NA non-coding downstream 279265 1070327 ~ 1070771 (+)
G108516 NA non-coding downstream 280232 1071294 ~ 1071772 (+)
G108519 NA non-coding downstream 371802 1162864 ~ 1193441 (+)
AMCG00006236 NA other upstream 122669 644718 ~ 652140 (+)
AMCG00006231 NA other upstream 340904 426976 ~ 433905 (+)
AMCG00006218 NA other upstream 549456 219104 ~ 225353 (+)
AMCG00006205 NA other upstream 593313 175725 ~ 181496 (+)
AMCG00006208 NA other upstream 634151 133988 ~ 140658 (+)
AMCG00006246 slc39a7,LOC107395789,LOC106588393 other downstream 55499 846561 ~ 855720 (+)
AMCG00006256 NA other downstream 194811 985873 ~ 1003871 (+)
AMCG00006276 NA other downstream 487398 1278460 ~ 1286052 (+)
AMCG00006275 NA other downstream 495767 1286829 ~ 1315558 (+)
G108585 NA other downstream 559321 1350383 ~ 1429987 (+)

Expression


Co-expression Network