G108365


Basic Information

Item Value
gene id G108365
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 270756 ~ 278261 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU135502
ttggtaatttaaagattttttattattattccacatTGCCAACAAACAAATAGTGAATTTGTGAACAGTGGGGACCCCACATAGTGTCACAACAGAGAGAAAACTTGTAACaatcatttgtttaatgtgtttttttctgatgtgAGTTGTGATGAGGCTCCTCTGAGTGGTGTCACTTCGTCTCCCCTGTGAATCTGTGGTACAGCTCCCCCACATCCTCCTGGGATACTTTGATCCAGCCAGTCTCTCTCATGTGGTACACTGtggggacagggacagacacacagtcactgaCGCTGCGGGAGcacagaggacagagacagCATACAGAGCCCTCTCTGGACAGCACAGTCAGGGGGGAGGGCAGGGAAACTCTAGTGatgttgtatatatgtaaaccaCTGAGTGTTCGATTGATCTGAGTTAAgatgggaggtggggggtcTGTGTCTGTAAACCCTGGACTGACACTGCATAGAGATTAAGGGAGTGTTCACACTGTCTATGTGGACAAAGTACATTACAATAGAGGGACAACAGAGGACCTTGTTTCACTATTCTGTCCCcatctgtgctgtactgtactatccTACACTGTGCTGAGTTTATCCCTGGGGAACTACAGGCAGCTTTGCTAAGGGCTCTGCTCACTGTTCACGGTGCCCCCCGAGTAGGCATCGCGGTGCGTGGCGTGGAAGATGGCGCGCTGGGCAAGGTCGTAGGCCTCGGGCACTGTCAGGTCGTAGCGGTAGCCGCTGTCCATCACGCCATATGCGTAGGAACTGCCTGAGCCCGTGGAGAACATGTTCCCACTGAGACGCAGCCCACTGTCGTCCACGTAGTACAGCCCTGGACCCTGGGACAGAACACAAACAGAACCACACatcactaatacacacacacacatacacacagtcactcacacagTCATAAAACAGTTTATAATCATCATGAGAAAGATAATAATCCACATGACtgcaaaaatataaactaaatcaATTCCCCGTCTTCATCACAATCACAGCtggaaaatataaagaaacacattttaaaacagacaaatgtaCACAGAAATATGTTTCAGCAAACACTGgcctgtattaaataaaaaatacagtgtttCAATGCAGATCCATGTGCATTACAACATGTTTCATTTTAGTCTCAACTagtattttcaatacattttgggggaagtttttaaaatatatttaaatcacactTCCAATATACGTGTCTTTAAATGTCTTAGCTTGCCTTCTTGTCCCAGCCGCACACCATGGTGCCCATGGACAGGCCCATGCCCCGGTACCCAGCCACCATGTTGGCCAGCAGCTTGGAGGCAGCGGAGACAGAGATGCGCTCCTTGTTCCTCAGCTTGTATATCCTGcaagtgagagagaggcagtgtgAGAGACAGTTGCACAAAGTAAACTGCAGTGCTATCGGGCCCTAAAAAGACACGACACATTGGCAGAATACCTGAGTTTAATAAtgaatgagaaacacaaaaggATCCTGACCAAATACCATCTCAGTGAGCACAGCCTGGCCATCGAGACGGGCCAgcacaggcagacctggctgcccagagaggacagGCTGTGTCCCCACTGCCAGCGCAGAGAGGTTGAGACAGAGCTGCACTTTAGTCtataatgtgaaaaatatgaacattttacGAGCACAATTTTTTCCCCAAATTGGCAGATCTCTATAAGAGATTTCCAGACCTGCCAGACTCGGAGAAAGTGCcagtccttctgggagaggAGACCAGCTGCATATTACTGGCAGCCCAGTATACAgctgcctgccacagcctgagggacacagtGGACACTCAGTCCACTCACACAGGGGACACCCCTGGACACAGGCAGTGACACCTATGCTACACCCaaatattattatcaatattaattttatgtctctctgaattattgtttaattgtattaatttaaatgaatcggttaattgtttaatatacatatacatgtacatttgcatacataaatacacatatgttTCAAAACTGTTTGATATGTCACCATTTCTTTGGCAATACTTATTTTTGGTTATGCCAATAAAAGCaccttgaatttgaatttgaatttaaattttgagagagagacaGGgagacactgtgtgtgtgagagacggagagagacagagagacagtgggAACAGAGTGCAGTACCACAGGCTACAGCAGTGAGTGCACATGGAGGGAGTGTTCTGTCAGTTGTTTcatggctgtgttgtgttgtgttgtgtagggGAGGGACTATTATGCAACATCCATCTTCTGCACAGACTCCTccaccacctccacctccaGCAGGGACGTCTGATCAGTCAGTACTGGTGTAGTCCCCTTGTCATATTTGTACTTCCCCAGTCTGATGGACAcaagagaggggaggggagaattttgtattatatacaaTCGCACAAACCAGATGAAACAGGAGGGAtgtaatttaaacacacactcagTCAGACAGTAGACACcatgaaagagggagagaacatAGAaaagagctggagagagagaaaggataACACAGAATCTCTTgttaataacacacacatacacacacccaatCGAACAGATGTGATGTTTATTGTTACATGttgatgtgtgtatatttatattt

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
TU135502 True 2661 lncRNA 0.45 2 270756 278261

Neighbor

gene id symbol gene type direction distance location
AMCG00006221 NA coding downstream 3875 263637 ~ 266881 (-)
AMCG00006222 NA coding downstream 8324 256337 ~ 262432 (-)
AMCG00006220 NA coding downstream 28623 236326 ~ 242133 (-)
AMCG00006219 NA coding downstream 75407 181384 ~ 195349 (-)
AMCG00006214 NA coding downstream 98374 165920 ~ 172382 (-)
AMCG00006229 NA coding upstream 9430 287691 ~ 290685 (-)
AMCG00006228 NA coding upstream 17945 296206 ~ 299137 (-)
AMCG00006227 NA coding upstream 32963 311224 ~ 321088 (-)
AMCG00006230 NA coding upstream 66514 344775 ~ 352314 (-)
AMCG00006238 NA coding upstream 229908 508169 ~ 511193 (-)
G108330 NA non-coding downstream 95563 140559 ~ 175193 (-)
G108349 NA non-coding downstream 152357 117137 ~ 118399 (-)
G108329 NA non-coding downstream 231407 33213 ~ 39349 (-)
G108323 NA non-coding downstream 249406 17554 ~ 21350 (-)
G108366 NA non-coding upstream 87017 365278 ~ 368624 (-)
G108397 NA non-coding upstream 157140 435401 ~ 435621 (-)
G108427 NA non-coding upstream 307281 585542 ~ 712764 (-)
G108451 NA non-coding upstream 492850 771111 ~ 771337 (-)
G108461 NA non-coding upstream 533474 811735 ~ 811963 (-)
G108324 NA other downstream 45615 85489 ~ 225141 (-)
G108379 NA other upstream 55527 333788 ~ 343011 (-)
AMCG00006232 LOC107694105,LOC107737194,LOC107751684,LOC107575376 other upstream 115571 393832 ~ 397899 (-)
AMCG00006241 NA other upstream 201321 479582 ~ 562415 (-)
AMCG00006243 NA other upstream 422274 700535 ~ 701940 (-)
AMCG00006245 LOC106569953,LOC106588396,LOC107101422,LOC107103722 other upstream 447803 726064 ~ 748736 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G239285 NA unknown NW_024375770.1 VHII01000033.1 147941 ~ 168575 (-)