G108366


Basic Information

Item Value
gene id G108366
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 365278 ~ 368624 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU135507
CTGTACCTGTCCTCTCCAGAGTCTCCCTCCCATAGCCGACATACTTCTTCACCCACTCGATGCACTCCTGGTCCAGGTAGTTCTTTGCACTCTGACCCAAGGCTCTGTCTGCGTCCCACTTGTTTTTCGTGCTGAAGGCCCTCTGGTTGGCAGCGGTCCAGGTCAGGGTGTCCTTGTCCAGGCTGATGTAGTCCGCCCCGTCGTACCCAAACTGCATGAACCCTCGAGTCGTCCCGTCATCGTCCAGCTCACAGCCGTACATCCACTGCACTGTGTGGACGCCTGCAGGACAGAGGAGACCCTGAAAACCACCGCTCGCCTGGGTGTCGCGTCGGCTCGGTGCAGCGGGATGCGTCTCTCGTCGGCGGGTTTTTGACGTTTAAAACGCTTACGAGTCGTGAGCTGTCCGTGTGCTCCGTGTTATTTAATCAGTTTGAATCTGTTAAAAGCGCCATATCTCATGTAAATAACTGGTTATTATACTGTGAGTCatactattaatattatgtgcgttattataattgtattgttattaatagcagtaataataacaattacaggctaataataataatactgaacaGATAATAATCTGAACATGTAAATTCCCCGAGCAGCGACCATTTTCTTGGCAGATTCGCTGCTTGTGCGAAGCAGTAAAATACGGGCTTCCGACCAACAAGCATCTCGAacgatttttgtttttgacttttGCTCCCGCGCTCGCGACCGTCTCTGCGGGACGAGCGCTTACGTCACACTACGCTAACCgtctcccataggtgctcaAAGCTGTCACTCAGCGTGCCGATGAGCCTGGTTACGTCATTTCCGCTTAAGCAGCGCCGAGCGACCTCCCCTTTAAGACACGCGTCCGTGTCACTCATACAGGGCGGGGCTGTAGCTCTCCAATgacacagagctgtgtgtgtgtgagtgtgtgtatctgtgtgcatctatgtgtgtgtgtgtgagtgtatctgtgtgtgtgtgtgtgtgtgtgtatctgtgtgtgtgtgtgtgagtgtgtgtgtgtgagtgtgtgagtgtctgtgtatctgtgtgtgtgtgtgtgagtgtgtgtgtatctgtgtgtgtgtgtgtgtgtatctgtgtgcatctatgtgtgtgtgtgtgtgtgtgagagagagtgtgtgtgtatctgggcGGTGTGGTGGCTGGGATGAGTCACTGCATC

Function

GO:

id name namespace
GO:0065009 regulation of molecular function biological_process
GO:0050790 regulation of catalytic activity biological_process

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation

RNA

RNA id representative length rna type GC content exon number start site end site
TU135507 True 1198 lncRNA 0.50 3 365278 368624

Neighbor

gene id symbol gene type direction distance location
AMCG00006230 NA coding downstream 12964 344775 ~ 352314 (-)
AMCG00006227 NA coding downstream 44190 311224 ~ 321088 (-)
AMCG00006228 NA coding downstream 66141 296206 ~ 299137 (-)
AMCG00006229 NA coding downstream 74593 287691 ~ 290685 (-)
AMCG00006221 NA coding downstream 98397 263637 ~ 266881 (-)
AMCG00006238 NA coding upstream 139545 508169 ~ 511193 (-)
AMCG00006240 NA coding upstream 170575 539199 ~ 539936 (-)
AMCG00006242 NA coding upstream 296962 665586 ~ 675760 (-)
AMCG00006239 NA coding upstream 307960 676584 ~ 686559 (-)
AMCG00006244 NA coding upstream 343208 711832 ~ 720393 (-)
G108365 NA non-coding downstream 87017 270756 ~ 278261 (-)
G108330 NA non-coding downstream 190085 140559 ~ 175193 (-)
G108349 NA non-coding downstream 246879 117137 ~ 118399 (-)
G108329 NA non-coding downstream 325929 33213 ~ 39349 (-)
G108323 NA non-coding downstream 343928 17554 ~ 21350 (-)
G108397 NA non-coding upstream 66777 435401 ~ 435621 (-)
G108427 NA non-coding upstream 216918 585542 ~ 712764 (-)
G108451 NA non-coding upstream 402487 771111 ~ 771337 (-)
G108461 NA non-coding upstream 443111 811735 ~ 811963 (-)
G108478 NA non-coding upstream 483660 852284 ~ 855672 (-)
G108379 NA other downstream 22267 333788 ~ 343011 (-)
G108324 NA other downstream 140137 85489 ~ 225141 (-)
AMCG00006232 LOC107694105,LOC107737194,LOC107751684,LOC107575376 other upstream 25208 393832 ~ 397899 (-)
AMCG00006241 NA other upstream 110958 479582 ~ 562415 (-)
AMCG00006243 NA other upstream 331911 700535 ~ 701940 (-)
AMCG00006245 LOC106569953,LOC106588396,LOC107101422,LOC107103722 other upstream 357440 726064 ~ 748736 (-)
AMCG00006247 NA other upstream 470231 838855 ~ 874494 (-)

Expression


Co-expression Network