G108379


Basic Information

Item Value
gene id G108379
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 333788 ~ 343011 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU135526
tttttaaaaagatacagaatgttttattttaatcaaagagACATTTGGAAGATTTTGGATTGAAGATTAATCAGAAGCCTAGTTTTTAATCTGGACACAAATGTAATGGGTAGTTTTATTTAGATTTGTGAATATGTTATTAACACAGTCAAATATAaatgaagataaaaaataaattaaaaaacatatacaataaaacaattgtcaTTCTGAAACTTTGAATAATTCAAACTCACAGAACTTGACACCTGTATAACTACCCTCATCTCCACAACATAACTATTAATAGTTAAAGGTTTGACTTTCCGGCAAGGcctagaaaaacaaattatatatatatatatagggatcCTGTGCCCAGTACTGTTGCAGATGGTGTTTAGGAACagtttgaaatatatatcaatCAGGCATCAGGCTGTACTGCAAATGCAAATCTCAAGTTCAAAATGTAGAGGTGCTCTATGTGCACTGTCTATGTTGTGTCctatcagtgtgtgtgcagtgctgtggtCAGTGTGCTAAAGTCACTGTCCTCAGCACTGATGTGCATGGGGTGGGGTAGGGGCACTTCATCTGCCATCTCCCCCGGGCGAGCCCCTGCCTGCTCTCTTGATGTTCAGTGCATGTTACTGGTCCTCAGTATGTTTCCatgtgtacagtatgtgttgagtcagtgtgtgtgcagtgtgtactgGAGCCAGCTGTTTCCTCAGTGTTTATGAGTGTGTaaagtcagtgtgtcagtgtgcgctCTGCTCAGTGTCctcagtgtgtatcagtgtccTCAGTGTATGTCGGTGTGTCAGTGTCCTCAGTGTGCTCTCTGCTCAGTGTCCtcagtgtctgtcagtgtgcgCTCTGCTCAGTGTCCTCAGCGAACAGCCTTTCTCTCAGTCTGTAGTAGTGCCCTCTCAGGTCCATCAGCTCCTGGTGAGAGCCTCGCTCCTTCACCCCCCCGCTGTCAATCAGNNNNNNNNNNNNNNNNNTCTCCAGCAGAGACACACATGTGCTCTTCCCCCCTCCTGAGGGGCCCACCAGGGCTGTCACCTGACCTGGCCGCAGCTCCAGAGACACGCC
>TU135528
tttttaaaaagatacagaatgttttattttaatcaaagagACATTTGGAAGATTTTGGATTGAAGATTAATCAGAAGCCTAGTTTTTAATCTGGACACAAATGTAATGGGTAGTTTTATTTAGATTTGTGAATATGTTATTAACACAGTCAAATATAaatgaagataaaaaataaattaaaaaacatatacaataaaacaattgtcaTTCTGAAACTTTGAATAATTCAAACTCACAGAACTTGACACCTGTATAACTACCCTCATCTCCACAACATAACTATTAATAGTTAAAGGTTTGACTTTCCGGCAAGGcctagaaaaacaaattatatatatatatatagggatcCTGTGCCCAGTACTGTTGCAGATGGTGTTTAGGAACagtttgaaatatatatcaatCAGGCATCAGGCTGTACTGCAAATGCAAATCTCAAGTTCAAAATGTAGAGGTGCTCTATGTGCACTGTCTATGTTGTGTCctatcagtgtgtgtgcagtgctgtggtCAGTGTGCTAAAGTCACTGTCCTCAGCACTGATGTGCATGGGGTGGGGTAGGGGCACTTCATCTGCCATCTCCCCCGGGCGAGCCCCTGCCTGCTCTCTTGATGTTCAGTGCATGTTACTGGTCCTCAGTATGTTTCCatgtgtacagtatgtgttgagtcagtgtgtgtgcagtgtgtactgGAGCCAGCTGTTTCCTCAGTGTTTATGAGTGTGTaaagtcagtgtgtcagtgtgcgctCTGCTCAGTGTCctcagtgtgtatcagtgtccTCAGTGTATGTCGGTGTGTCAGTGTCCTCAGTGTGCTCTCTGCTCAGTGTCCtcagtgtctgtcagtgtgcgCTCTGCTCAGTGTCCTCAGCGAACAGCCTTTCTCTCAGTCTGTAGTAGTGCCCTCTCAGGTCCATCAGCTCCTGGTGAGAGCCTCGCTCCTTCACCCCCCCCGCTGTCAATCAGGATGATCTGATCAGCCTTCTCCACTGTCTTCAGCCTGTGAGCCACGAGCAGCACCGTCTGAGAGACACAGCTGGACAGGGCCTTCTGGAtctacagacacagagacacagttactgcactgacactgagacacacagctGGACAGGGC
>TU135530
CTCCAATACAAATTTGACAAgtcaaaatgaagaaaactgaaggcaaaacgccccaagaacaagcaggaactaaagacactgcagtgcaggtctggcagagcagcaccagggaagaaacccagcatctggtgacgTCTATGGGTTCAAACTTCAGGccgtcattgactgcaaaggatttgccaccaagtattcaaactcacaatttaattcatgaatatGTTAGTTtgaccaaatacttttgagcccctaaaattgaggGGACCACcaataaaaatgggtgtaattcctacagcGTTCACCCAATGtgaatgtaactaccctcaaattaaagatgagtctacacttaaagcacatctttattgtttcctttcaaatctattgtggtgatgtagagccaaaatgatgacacttGTGTCACTGACAGCCATGCTGCcctgacactctgacacacagcaCTCTGCGGTACTAACAGATATTAAAGTGTATGTGCTTTGGATTGATATAGAGATGGATAATGTGTACAGTGCGGAGCAGCTCTCTGGCTGTGTGACCTGGCAGACCTGACTGCACACCGCCTTCCCTCCAGGAGACTTTGGGAACTGAGCTGGACAGAACCGGCCCGACCCActttgactgactgacacactgaacacaggcTTCAGTCCCTGTGGACAGGCCGCTCTCGGTCCCGCTGCCACCCTCACCGTCAGTGCGCTTGTGTCTCTGTGGCTCTGAGTGaagagagtgtgtctgtgtagggCCGGTCTGTgcgcagtcagtcagtcagtcagtgagggtgtctgcagtgctgcaacaataataattttatttagaaGTGCCTTTCAAAATACTCAAAATAAGGACAGTGTACAAAAACTCAGAACAACATCAGACAAACATACAATACAGGTTATAGAGCAGTAGAGGTGTTTGTgagtatgtgcgtgtgtgtcagcGTATGAGTGTGTACATATCACTGAGACTGAAAGTGAGACAGATTGAGACACGTGTGAAGACCGGGACGGAGAGTAGGGGATGAAGAGATTGTCTATGAGCGAGCCAGGCCATGGAGAAATTTAAACACTAACACAAGGACTTTAAACTGGGTTCTGGGAGCCCGTGGAGGTGTTTCAAGGTGGGGgagatgtgttcccagggtctggaCCGGGTGAGGAGCCCTGCTGCAGTCATACTGAAGCTTGCGGAGTAGAGACACAAAGAACAAGAGCATTACAGTAACCCAAACTGAATCCCAGCTAGCAGAGGTTCTGGACTTCCTTCATGGTGGATGAGTGCTGATCACAATGGCTTCagttttattgctgtttaaCCGCAGGTAGTTGGAGGCCATCCATGAGTTTATGTCATGAAGACATGAACTGGAGCAGACATAGGTAGTGTGGTGTGAAGGTAGATCTGGGTGCCATCAGCGTAACAATGGAGGAATTAGATGAAGAAGAGCAGAGGCCCAAGGACCGAGCCCTGAGGGACCTCACAGGATAAAGGAGCTGGGGTGGATGGAGATAAACGTCTGTCTGGTAGATCAGATTGGAGCCAGGAAAGGGCTGAGCCAGAGACACCAAGGACAGATTCCAAACGATTGAGAAGTTTTTATCATGGCAAACGGCGTCAAAGGCAGCTGGTAaatcgaggaggatgaggataTTCAGTCAGCTGTGATGAGAAGATCATTTAGACTTTAAGTAGCACTTCAGTACTTTGATTAGTATGGACACCAGACTGAAAGACCTCGAAGAGCTCGTTTGTGGACACATGTGAGTGAAGCTGAGGGGCAACCGTGTGCTCTGGTACTTCCACAAGGAAGGGGACACTGGAAATAGGCCGataattcctgagctcatcggggTTGAGACCAGGTCCTTAAGGACTGGCGTGATGGCAGCAGATTTCAGGATGGAAGAGACAGGTATCAAGAAGAGGGGAGAGAACAGGAAGGCATTTCTCTCTAGATTTAGACAGCAGCTCAGTCACAAAGTGCTCGTCGACAGGGGAGTGAAAACCACGAGGAGCAGAGCGATGGGGAGGAAGGACAGAGACAGCGCATGTGGGAGGAGTCTGGTTGATCAGAGGATGAACAAGATCAATTTTATTGTGAATGAAAGTGAGGAAATCATGACAGAGGGGGATGGAGAAAGTGGGAAAGACTCAGCGGGATGTTGGGGCTTTGTGATCGCAGAGAACAGAGATCTGGGGTTTCCTCGGTGGTGAGTGATTCAGTAAGTACAATAGGGGTTTTGTGCCGCAACCAGGGCTGATTTGTCGAGTTAGACGTGTTCCCTGTACACCAAGGCATGAACCAGCAAGCCGGTTCTGTTGGAGAGGCGCTCGAGCGATGACCAGTGGACCTTCATGGACCTCAGTTCAGGTGTGAACCAAGGGCCTGAGTGAGAGCAGGTAACTGTGTGGTGATTCCAGGGGCAAtagagtcagtgtgtgtgcagtgtgcactGGAGCCAGCTTTGTCCTCAGTGTGAGTCAGTGTCCtccgtgtgtgtcagtgtgctcagtgtgcaCTCTGTCCAGTGTCCtcagtgtctgtcagtgtgcgCTCTGCTCAGTGTCCTCAGCGAACagcctctctctcagtctgtaGTAGTCCCCTCTCATGTCCATCAGCTCCTGGTGAGAGCCTCGCTCCTTCACCCCCCCGCTGTCAATCAGGATGATCTGATCAGCCTTCTCCACTGTCTTCAGCCTGTGAGCCACGAGCAGCACCGTCTGAGAGACACAGCTGGACAGGGCCTTCTGGAtctacagacacagagacacagttactgcactgacactgagacacacagctGGACAGGGC

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
TU135526 False 1080 lncRNA 0.44 2 333788 343011
TU135528 False 1121 lncRNA 0.44 2 336736 343011
TU135530 True 2830 TUCP 0.49 2 336736 339948

Neighbor

gene id symbol gene type direction distance location
AMCG00006227 NA coding downstream 12700 311224 ~ 321088 (-)
AMCG00006228 NA coding downstream 34651 296206 ~ 299137 (-)
AMCG00006229 NA coding downstream 43103 287691 ~ 290685 (-)
AMCG00006221 NA coding downstream 66907 263637 ~ 266881 (-)
AMCG00006222 NA coding downstream 71356 256337 ~ 262432 (-)
AMCG00006230 NA coding upstream 1764 344775 ~ 352314 (-)
AMCG00006238 NA coding upstream 165158 508169 ~ 511193 (-)
AMCG00006240 NA coding upstream 196188 539199 ~ 539936 (-)
AMCG00006242 NA coding upstream 322575 665586 ~ 675760 (-)
AMCG00006239 NA coding upstream 333573 676584 ~ 686559 (-)
G108365 NA non-coding downstream 55527 270756 ~ 278261 (-)
G108330 NA non-coding downstream 158595 140559 ~ 175193 (-)
G108349 NA non-coding downstream 215389 117137 ~ 118399 (-)
G108329 NA non-coding downstream 294439 33213 ~ 39349 (-)
G108323 NA non-coding downstream 312438 17554 ~ 21350 (-)
G108366 NA non-coding upstream 22267 365278 ~ 368624 (-)
G108397 NA non-coding upstream 92390 435401 ~ 435621 (-)
G108427 NA non-coding upstream 242531 585542 ~ 712764 (-)
G108451 NA non-coding upstream 428100 771111 ~ 771337 (-)
G108461 NA non-coding upstream 468724 811735 ~ 811963 (-)
G108324 NA other downstream 108647 85489 ~ 225141 (-)
AMCG00006232 LOC107694105,LOC107737194,LOC107751684,LOC107575376 other upstream 50821 393832 ~ 397899 (-)
AMCG00006241 NA other upstream 136571 479582 ~ 562415 (-)
AMCG00006243 NA other upstream 357524 700535 ~ 701940 (-)
AMCG00006245 LOC106569953,LOC106588396,LOC107101422,LOC107103722 other upstream 383053 726064 ~ 748736 (-)
AMCG00006247 NA other upstream 495844 838855 ~ 874494 (-)

Expression


Co-expression Network