G108427


Basic Information

Item Value
gene id G108427
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 585542 ~ 712764 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU135605
tataattaatacaataacaaaataaaaaaaaaaaaaaaaaacacacacctttGGCTATATTCCGTGATCCCTGAAGCATTGTTTTATTACCCCTCCACAGTCAAAGTATCTCTTCACTTTACATAAAGAGGACACATAATTCCAAGACAAGACAGAACAGTTTTGTATATTATtgcaattgttattttgtaggattgtcaatttctgtaatatttatcTCAACGTAAGCAAGATGAAACCCCTGTCCACAGCTCAGCTCCTGGAGGTCCTCCTTCCCTGGAGAATTCTGTTTACCTGTGGCTCTGAACAACCTGTAAGAAACAGGATTACAGAAGTAAGTGGATTTATCTTCTGGGTGATGCCgtcagctacacacacacacacgcgcacacctccatttttctagtttttattttctcaatgtactctgaaattaaaagcatagaacaaaaacaaattggagataaatcatggaatctttaacaaaatgtaaccccttaagctgacaaacccctctggtccCTTAAAAAGGCACCAACtcctgtgcttctctttaatcccatgtgtactcctCACTGTTGTTGCTTACCAAGTGTTTGGCATCCCATGAGAGcggagactctcagctttctaaagATGTGAatcattctctgatgtgaaaaatgtgttttttatacacaaaatgggggggtggggaatgCTTAATCTGAgtatgaatacaaaatctcagaaaatattgacaataacattctggaaccagacgGTCTACTAATCAAAACGAGAGCAgacacgttttggtagaagcgaatgcgtttgagaatgaaacactagtagccaagagaataatctttcaaacgatgtgcgcattgtaggaatactgtgtcacttctatgcacaggagctgcgtgtaacactgacaaataatgcttaagagggtggagtaacagtatataattctgaaatggacattgttcagtttttggtaacaaactttttctttaacctctggcagtttattttcctttgtaccatttcaggtgattcactggacttgaactgcttacatttcaatacaaactggaaaaattggggtgttctaaaacttttgaccagtagtgtgtgtatatggcctcacagctcctgggatCCTGGTTTGTTTCCAGTgttgggtgtctgtctgtgtgcagcgggtctgttctccccgtgtctgtATGGCTTTCTCTGCGTGAAGCAGTTTCCTCTcacatcccaaagacaggcTGCAAATGCCGTCATTTTGGTATATAAACAGAAACGCTATCTTGCCCAGGTGTGGAGTTATGTATGATGCCATGCAAAGTAAGCTATGCGAGATATTGTTTTACATGCTATGTCTTCTGAAGGTTAGGCctcataaaacaaactttattaatgTCAATTTACTAATTGAaagtaatatactgtatttttaaattaaaatttataataagatacaatttcattttttacaacAGTTGTATGCTCCATGTCTGTGAAAGTGTGAAAAAGTCGTTTGAGGGTTATCATATAATATTATACttattagaatatatataatattatccATCCACTTGCCTATGTATTGTACAGATATGCAGGTATTGTGAAGACTCATTTAGGAGTGGCCTCacctttcaataaataatactatatcttaatacaggttttaaaataggttttatAACACGAAGATCAGTTCAAGCTGTACAGAACTACTAGAATAACCagttatttagtttaattttaaatttgcaaCTATTTATTGATGCCTGTATTTGTGCATGTGAAGTACAATTGTTATAAACTATAGGCCTACATACAGTATAAGTTAACTTTAATAAGTTACAGTAGGAAATTAAGCATGATAACTTCAGAACTAATCAaagtaattacaataatactgaATAATGCATAGTAAATACgggttcaaattaaattaagaggCAGAGCAAATTGgatcaggttaaaaaaaaaaaaccaaaaacacacttAATTATTAGTTAGTATAATGTTGAAAATCAAGAATTGACAGGTACGACAATTCatatttaactgaaattaaatctaGCCTACACTTAATCAgataatacagtaatattaaTGACAGCGTGTTAGTAAAATATAACTAACAATGCGTAAACATGTTTACAGttataaataaaagtttaaacaaTAAACACCTCTGTTGTATCTCCCCTTCCATGTGTTGCGTTATAGGCACTGTACTTCTGTCCCTGGACAATATGGCCACTGGAGTGAGCGAGTGCGTGCGtgcgtgagtgtgagtgagtgctgCCCTGTGATGGCCTGGTGTCCCATCCAGGTGAGCCCTGTGTCTGCCAGGTTGGGCTCTGGTTCACCAAAACCCTCTACAGGATAAAGCGGTGATTGATAATGGATGGagagatagatatatatttagaagGCTATGTGTCTCACAATGTCTGACTAAATCTCATTTTATCAGGTGACATTTTACTCAGGTTGGTCTGTTATAATTACtaacacaaatatgttttacctTAAGCGGTTGGCACCAGAATGCGccctgGATTTCTTCTTGTAGTAGACTCCCCCCGCAGCTGCAATGACAAGACCCAGCACCAGACCAGACGCCCCGATAATCACCTTGTTCCTGTCAGACCCGGGCATCGAGGACCCCATTTCACCTCTCTGGGCTGAGGAAAGCTGCCGTGCTCCACCTTGCAGGAGATGGTCTCCCCAGACTCTGGCGTGTACTCCAGGTGAGAGTGGATCTGATAGTACCAGTCTCCGTCGGACAGCTCCTCTGTGGACGTCACGTCCGAGCCCACGGTCCGCCCGTTTCTCAGCCAGGTCACCTTGATCGGTTTAGGGTAGAAGCCAAACACACTGCAGACCAGCATGGCCGGGTGCTTCGGACTGAAGGGCTTCTCAGACCGGAGCCGAATGTAGGGTTCAGCTGAAGACTGTCTTATCCAGTATGGTTTTGTAGTAGAGTCCAGCGTTGGGCTTGCAGTATGTATCCCGGCTAGGGAGGAGTCTTCCCCGCTCAGCTGGATCCTTGTTCAGTCTCTCTGCGTTCTTCACTCCCAGCTCGGTGTAGCCAATGTACTGGTTCAGAGTGCTGTTGTATCGCAGGAACTCCAGCTtgttaaaaatgtgtctgtCAATGTACTCCAGGCCATCCAGGCTCTTTGAGCTGTACCGACACTCCCCTTGCATATGGTACATATATGCATCTACAcggaaaaacacacatttcaaaa
>TU135606
NNNttttttttttttttttactatttttaaaataaagcagaacatTGGAAAAGGCCACATTGTTACTATTTTACATAGGTTTCAATGATGTTCACCATATTCctatatatttgattaatttatttgtataattaatagctaaaacaaagaaaaaaaaaaaaaacacacacctttGGCTATATTCCGTGATCCCTGAAGCATTGTTTTATTACCCCTCCACAGTCAAAGTATCTCTTCACTTTACATAAAGAGGACACATAATTCCAAGACAAGACAGAACAGTTTTGTATATTATtgcaattgttattttgtaggattgtcaatttctgtaatatttatcTCAACGTAAGCAAGATGAAACCCCTGTCCACAGCTCAGCTCCTGGAGGTCCTCCTTCCCTGGAGAATTCTGTTTACCTGTGGCTCTGAACAACCTGTTCCTGAAGG

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04612 Antigen processing and presentation
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection

RNA

RNA id representative length rna type GC content exon number start site end site
TU135605 True 3266 lncRNA 0.40 5 645365 712764
TU135606 False 446 lncRNA 0.33 2 585542 650826

Neighbor

gene id symbol gene type direction distance location
AMCG00006240 NA coding downstream 45606 539199 ~ 539936 (-)
AMCG00006238 NA coding downstream 74349 508169 ~ 511193 (-)
AMCG00006230 NA coding downstream 233228 344775 ~ 352314 (-)
AMCG00006227 NA coding downstream 264454 311224 ~ 321088 (-)
AMCG00006228 NA coding downstream 286405 296206 ~ 299137 (-)
AMCG00006248 rxrba,rxrb,LOC107729870,LOC107566635,LOC107751683 coding upstream 61710 774474 ~ 785585 (-)
AMCG00006255 NA coding upstream 184214 896978 ~ 900845 (-)
AMCG00006259 NA coding upstream 330098 1042862 ~ 1047510 (-)
AMCG00006260 NA coding upstream 335414 1048178 ~ 1049728 (-)
AMCG00006258 psb7,LOC106569939,LOC106588382 coding upstream 355290 1068054 ~ 1073294 (-)
G108397 NA non-coding downstream 149921 435401 ~ 435621 (-)
G108366 NA non-coding downstream 216918 365278 ~ 368624 (-)
G108365 NA non-coding downstream 307281 270756 ~ 278261 (-)
G108330 NA non-coding downstream 410349 140559 ~ 175193 (-)
G108349 NA non-coding downstream 467143 117137 ~ 118399 (-)
G108451 NA non-coding upstream 58347 771111 ~ 771337 (-)
G108461 NA non-coding upstream 98971 811735 ~ 811963 (-)
G108478 NA non-coding upstream 139520 852284 ~ 855672 (-)
G108480 NA non-coding upstream 145030 857794 ~ 858315 (-)
G108484 NA non-coding upstream 176309 889073 ~ 889802 (-)
AMCG00006241 NA other downstream 23127 479582 ~ 562415 (-)
AMCG00006232 LOC107694105,LOC107737194,LOC107751684,LOC107575376 other downstream 187643 393832 ~ 397899 (-)
G108379 NA other downstream 242531 333788 ~ 343011 (-)
G108324 NA other downstream 360401 85489 ~ 225141 (-)
AMCG00006245 LOC106569953,LOC106588396,LOC107101422,LOC107103722 other upstream 13300 726064 ~ 748736 (-)
AMCG00006247 NA other upstream 126091 838855 ~ 874494 (-)
G108708 NA other upstream 413798 1126562 ~ 1134690 (-)
AMCG00006266 NA other upstream 422137 1134901 ~ 1137952 (-)
AMCG00006274 zbtb12,LOC106570057,LOC106588515 other upstream 498522 1211286 ~ 1216184 (-)

Expression


Co-expression Network