G108478


Basic Information

Item Value
gene id G108478
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 852284 ~ 855672 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU135682
cactttttatttttaaaaagacaagaaTGTACACAGACCCAAActcaaaccaaacacaaataacagaGGAACTAAACTGACTAAATGAGACTGATAGACTAGACTGTCTCTGTCTGGGCTGGAATAGACTGTGCCTGACGGTCACTGGTCCCTCCTCTCTACATACCTGCACTGACACCTCCGGGACACGAGGGGGAGACAGGGGCACACTgatgcaggagagagggagcatcCGAGAGAGAGAATCTGTCCCATATCTGTGATAAGACAACGCGTgtgtatacactcacacacagtctcccgtctccctctgtctctctctctcattctcattCTCACTCCAATTTTTActcctcttcttctctctcaccCATTCTATCCccctctcactcactcagtAGCTCCCAGCTCCAAggccacctctctctcctctccgtCGTTACTCGTACTCCGCGATCAGCACCATCATCCAGACGCCCATGAGCAGCAGGATGGTGGCTGTGGTGACGAGGCCCACGGTCGGCCCCGCCAGGAAGGAGGCGCCGATGGCCAGGCCATCGGTGAAGTTGTGGGTGAAGTCGGCGGCCAGGTTCAGATACCCCGACACCTTAATATCTACACACAGGGAAGGGAATGCGGTTTCAATACAATAACACTGAGTGACCAATCGGACACCACAGAGCTCTAACACCGCactgagagaggcagagacacaaCGAGGTGCCAAAGCACAGCAGCCCCGAGCTGCAGGAGGCGCTGCTCAGACTCGTTAAGCCGCTGCTGAGAGCCGG
>TU135684
cactttttatttttaaaaagacaagaaTGTACACAGACCCAAActcaaaccaaacacaaataacagaGGAACTAAACTGACTAAATGAGACTGATAGACTAGACTGTCTCTGTCTGGGCTGGAATAGACTGTGCCTGACGGTCACTGGTCCCTCCTCTCTACATACCTGCACTGACACCTCCGGGACACGAGGGGGAGACAGGGGCACACTgatgcaggagagagggagcatcCGAGAGAGAGAATCTGTCCCATATCTGTGATAAGACAACGCGTgtgtatacactcacacacagtctcccgtctccctctgtctctctctctcattctcattCTCACTCCAATTTTTActcctcttcttctctctcaccCATTCTATCCccctctcactcactcagtAGCTCCCAGCTCCAAggccacctctctctcctctccgtCGTTACTCGTACTCCGCGATCAGCACCATCATCCAGACGCCCATGAGCAGCAGGATGGTGGCTGTGGTGACGAGGCCCACGGTCGGCCCCGCCAGGAAGGAGGCGCCGATGGCCAGGCCATCGGTGAAGTTGTGGGTGAAGTCGGCGGCCAGGTTCAGATACCCCGACACCTTAATATCTACACACAGGGAAGGGAATGCGGTTTCAATACAATAACACTGAGTGACCAATCGGACACCACAGAGCTCTAACACCGCactgagagaggcagagacacaaCGAGGTGCCAAAGCACAGCAGCCCCGAGCTGCAGGAGGCGCTGCTCAGACTCGTTAAGCCGCTGCTGAGTAAATGACACTGAAGGTAAATTCCTGCTCTACAGACAacctggtgctgctgtcgccCACAGATCAGGGGCTGCAGTAGAGCCTGTCATTGCTGGAGCAGCACTGTCAGACCTGGTCCCTGGCAGTCAACATGAATAAACCCAGAGTCATGATATTCCAGAAGAAAGCCAGATCTCAGGGACATGGGTACCGCTTCACTGTGGGCAGCAGCACCCTAGAGCACAGCACCAGCAACACACACCTAGGTCTGCCCATCAGTGCCTCAGGGAGCTTTAACCAGGCAGTGAACTCACTGAAGGAGAGGCACGCTGGGCTTTTCATGCCATAAAGAGGAGGCTCTATAATATCCATCCTCCTGTTAGAATTTGGATTTAAACAAATCCAAAGTATAATTCAACCAATAGCCTTATACAGCAGTGTGGGGACCAATCACCTCCCAGGAGATCACAAATTGGCACAAACACTCACAGAAACCCTGCTAGCAGAGTTCtgtacaaatatattgaaagtacagagaaatacaCCAAACAATGCATGCAGGGCTGAATTAGGCCGTTTTCCACTGAttataaacattcaaaaaagAGCACTGAAATATTAGATTCACCTAAAACAGAGCAAATCTAACTCACTCCATTTCAAAGCCTTGCAATAGCAGGAGCTCAGCCCAGAGAAGAGTCCCCTCAGCCAGCTAGTCCTGAGGCTCACTGAGCAGAGCCACACTGCCCACAGTCAGAGCCACGCTCTGCAGGTCAGCTGCAGGACAGCACTGCACAAACAACGCCAATTCGACTGAACCAAATTATACCTCAAACTCTTATCTGGCCCATTGGGAAACCAACacttaaatacaaaacacactgtAGCGCTATCAGACCCTCAATAGAAACTACAGCCTGGCAGAATACCTGTGACtgtcagaaacacaaagcagaggCAGATCCTGACccagtacaggctcagtgaccacagcctggccagagaGACAGACCAACATAGGCAGAGCTGGCTGgccagagaggagcggcgctgtggtcactgcgagacaggagaggtggacacagagacgagcggcgctgtggtcactgagagatgCCTTGGATCTTTTCTCATGTCTACTGGGTTATTTTCACAAGTCTTTTATTTACAGATTCGTATTTCTGTTTATGAACCTGTtcgtttatattatttattgtgaatcGTATTGATTATGTAAATGAAAGTGTGTGGTTTACACACATTGGGCTTTTGTATACATGGTGACGCACTAATATGATTCCAGAATCATTTTCTAAAGTTTCCTTGCTAACCCTGTAGTAAAAATAACAGCCTTTATATTACTTGTAAATGCGAcacaaaaatctataaataaaaatactgcaatGCGTGGTGCAGTCACAGGTTTATTTGAAAgcagttaaacaaaacaataatcgACAAGCGCAAAGCGTGAAATACAGCGTTGCGTCTGTTAGCAGAGCAGCGCATCCTGACTGAGCCCGAGTGAGAGGCGGGTCGGTCCGGTGAGCAGCGGCTCTGCCCGCTCTGCCTACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135682 False 791 lncRNA 0.54 3 854359 855672
TU135684 True 2338 lncRNA 0.49 4 852284 855672

Neighbor

gene id symbol gene type direction distance location
AMCG00006248 rxrba,rxrb,LOC107729870,LOC107566635,LOC107751683 coding downstream 66699 774474 ~ 785585 (-)
AMCG00006244 NA coding downstream 131891 711832 ~ 720393 (-)
AMCG00006239 NA coding downstream 165725 676584 ~ 686559 (-)
AMCG00006242 NA coding downstream 176524 665586 ~ 675760 (-)
AMCG00006240 NA coding downstream 312348 539199 ~ 539936 (-)
AMCG00006255 NA coding upstream 41306 896978 ~ 900845 (-)
AMCG00006259 NA coding upstream 187190 1042862 ~ 1047510 (-)
AMCG00006260 NA coding upstream 192506 1048178 ~ 1049728 (-)
AMCG00006258 psb7,LOC106569939,LOC106588382 coding upstream 212382 1068054 ~ 1073294 (-)
AMCG00006265 NA coding upstream 301055 1156727 ~ 1160200 (-)
G108461 NA non-coding downstream 40321 811735 ~ 811963 (-)
G108451 NA non-coding downstream 80947 771111 ~ 771337 (-)
G108427 NA non-coding downstream 139520 585542 ~ 712764 (-)
G108397 NA non-coding downstream 416663 435401 ~ 435621 (-)
G108366 NA non-coding downstream 483660 365278 ~ 368624 (-)
G108480 NA non-coding upstream 2122 857794 ~ 858315 (-)
G108484 NA non-coding upstream 33401 889073 ~ 889802 (-)
G108491 NA non-coding upstream 52218 907890 ~ 909028 (-)
G108655 NA non-coding upstream 77843 933515 ~ 933825 (-)
G108664 NA non-coding upstream 97620 953292 ~ 958678 (-)
AMCG00006245 LOC106569953,LOC106588396,LOC107101422,LOC107103722 other downstream 103548 726064 ~ 748736 (-)
AMCG00006243 NA other downstream 150344 700535 ~ 701940 (-)
AMCG00006241 NA other downstream 289869 479582 ~ 562415 (-)
AMCG00006232 LOC107694105,LOC107737194,LOC107751684,LOC107575376 other downstream 454385 393832 ~ 397899 (-)
G108379 NA other downstream 509273 333788 ~ 343011 (-)
G108708 NA other upstream 270890 1126562 ~ 1134690 (-)
AMCG00006266 NA other upstream 279229 1134901 ~ 1137952 (-)
AMCG00006274 zbtb12,LOC106570057,LOC106588515 other upstream 355614 1211286 ~ 1216184 (-)
AMCG00006277 prrt1,LOC108272790,LOC107694357 other upstream 481515 1337187 ~ 1341665 (-)
AMCG00006292 NA other upstream 488844 1344516 ~ 1637731 (-)

Expression


Co-expression Network