G108484


Basic Information

Item Value
gene id G108484
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 889073 ~ 889802 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU135693
CACAGACTCACTACAGCCCCACAGTGGACAGTGTCCACAGACTCACTACAGCCCCACAGTGGACAGTGTCCACAGACTCACTACAGCCCCACAGTGGACAGTGTCCAGAGACTCACTACAGAAACAACACACTGCACTTCAAACGTCACTTCAAATCCGGGCGGCTCGACTGAATCACAATATTGATCAATGATGAAGCAGCGTCGGTGTGCGCGGAGCGGCCAGGCCCACAGTACCGGTATGAGGACCACAGGTACAGACTTACGGTCACTcagcgctgctgctgctgctgctgttgttacaGTTTATTCCAGTTTGCGCCGCCGTGTCGCAGTCTGTCTCCTCCACACTTCCGCGTCTCTCCGCACCGCTGTCCctccgtctgtctctctctctttcttcctggCGTTGTTTTTTCCAGGGAATTTCAAAcgtgtgctttttaaaaaacaaaactaaaaaaactaaacaaaaaataatataaacaaagtCTGGCGTCAGCGCCTCTCGCTGGCGGCCATTTTTCCGCCGGACGTGCCCAGCGCGTCACTTCCTGTATGAGCAGCGCGGGCGGCGCTCACAGCGCGGTCTGGCGGCGGGGAGAGAAATGCGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135693 True 614 lncRNA 0.54 3 889073 889802

Neighbor

gene id symbol gene type direction distance location
AMCG00006248 rxrba,rxrb,LOC107729870,LOC107566635,LOC107751683 coding downstream 103488 774474 ~ 785585 (-)
AMCG00006244 NA coding downstream 168680 711832 ~ 720393 (-)
AMCG00006239 NA coding downstream 202514 676584 ~ 686559 (-)
AMCG00006242 NA coding downstream 213313 665586 ~ 675760 (-)
AMCG00006240 NA coding downstream 349137 539199 ~ 539936 (-)
AMCG00006255 NA coding upstream 7176 896978 ~ 900845 (-)
AMCG00006259 NA coding upstream 153060 1042862 ~ 1047510 (-)
AMCG00006260 NA coding upstream 158376 1048178 ~ 1049728 (-)
AMCG00006258 psb7,LOC106569939,LOC106588382 coding upstream 178252 1068054 ~ 1073294 (-)
AMCG00006265 NA coding upstream 266925 1156727 ~ 1160200 (-)
G108480 NA non-coding downstream 30758 857794 ~ 858315 (-)
G108478 NA non-coding downstream 33401 852284 ~ 855672 (-)
G108461 NA non-coding downstream 77110 811735 ~ 811963 (-)
G108451 NA non-coding downstream 117736 771111 ~ 771337 (-)
G108427 NA non-coding downstream 176309 585542 ~ 712764 (-)
G108491 NA non-coding upstream 18088 907890 ~ 909028 (-)
G108655 NA non-coding upstream 43713 933515 ~ 933825 (-)
G108664 NA non-coding upstream 63490 953292 ~ 958678 (-)
G108689 NA non-coding upstream 150416 1040218 ~ 1101292 (-)
G108705 NA non-coding upstream 219849 1109651 ~ 1119698 (-)
AMCG00006247 NA other downstream 14579 838855 ~ 874494 (-)
AMCG00006245 LOC106569953,LOC106588396,LOC107101422,LOC107103722 other downstream 140337 726064 ~ 748736 (-)
AMCG00006243 NA other downstream 187133 700535 ~ 701940 (-)
AMCG00006241 NA other downstream 326658 479582 ~ 562415 (-)
AMCG00006232 LOC107694105,LOC107737194,LOC107751684,LOC107575376 other downstream 491174 393832 ~ 397899 (-)
G108708 NA other upstream 236760 1126562 ~ 1134690 (-)
AMCG00006266 NA other upstream 245099 1134901 ~ 1137952 (-)
AMCG00006274 zbtb12,LOC106570057,LOC106588515 other upstream 321484 1211286 ~ 1216184 (-)
AMCG00006277 prrt1,LOC108272790,LOC107694357 other upstream 447385 1337187 ~ 1341665 (-)
AMCG00006292 NA other upstream 454714 1344516 ~ 1637731 (-)

Expression


Co-expression Network