G108491


Basic Information

Item Value
gene id G108491
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 907890 ~ 909028 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU135702
gagagagtgacacAGTGCAAGCCTGCGctacatgaacacacacacacggacagagGTGTCACATTTTATTGAGCATCAACAGCATCACCAGCACAGAGCagtgttttgattaaattacacacacacaatcactatctctctctctcacacacacatctatattctctctctcacacactcactcagcacaggaatgtctctctctccacccccgCACGTCTCTCAGAAGTTGGGCTTGTGTTTCTTCACCTCCACCATGAGGTGGTGCAGGTTGATGAGTTCGGAGCGCACCGCCAGGCCCCGGTAGGGTGGCTGGGACAGAACCTTGTGGAACCCATGGTAGTACTGGATCAGCTGCGTCAGAGCTCCCTGAGAGAGGTGTGTAGAAGTCAGTGTGTACAGTAAGTCTATATCAATCAGAGTCTCGGTATGCACAGTGAGTGCAGTATATAAAGAGTGTAAGGTATATACAGTGTGCGCAGTAAATACAGTGcacagtatatacagtgttgCAGTAAATAGTGTGTGCTGTATATAAAGGGCGTAAGGTACATACAGTGTGCAGTAAATAGTATACAGTATAGACAGTGTGCAGTAAATACAGTGTgcagtatatacagtgtgtgcagtaaatacagtgtgcagtatatacagtatgcagTAAATAGTGTGCAGTAAATAAAGGACTTACAGTAAATAGGGTGTGCAGTAAATACAGTGTGCAGTATATACATAGTGACCAGATGTCCGCCTGTCAAGCACTTGTCTGCGTCTCACAACAGTTACACAATGTCCCGCATTATGAGTTTAAGCATAAGCATGATAGCGACGTTATACGGATGAacttcattcatatatatatttatatatatatcagcattATCAGATATATTTATCAgcattaattatgtaattattctgAACGCTGTGCTTTGCATGTCTGTGTTGGTGTAAAAGTCTTATCAACCGTCTCATTACaatatgtaacacaatttttggtCCTgagtagtaagtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135702 True 1015 lncRNA 0.42 2 907890 909028

Neighbor

gene id symbol gene type direction distance location
AMCG00006255 NA coding downstream 7045 896978 ~ 900845 (-)
AMCG00006248 rxrba,rxrb,LOC107729870,LOC107566635,LOC107751683 coding downstream 122305 774474 ~ 785585 (-)
AMCG00006244 NA coding downstream 187497 711832 ~ 720393 (-)
AMCG00006239 NA coding downstream 221331 676584 ~ 686559 (-)
AMCG00006242 NA coding downstream 232130 665586 ~ 675760 (-)
AMCG00006259 NA coding upstream 133834 1042862 ~ 1047510 (-)
AMCG00006260 NA coding upstream 139150 1048178 ~ 1049728 (-)
AMCG00006258 psb7,LOC106569939,LOC106588382 coding upstream 159026 1068054 ~ 1073294 (-)
AMCG00006265 NA coding upstream 247699 1156727 ~ 1160200 (-)
AMCG00006268 rnf5,LOC107694772 coding upstream 254272 1163300 ~ 1170846 (-)
G108484 NA non-coding downstream 18088 889073 ~ 889802 (-)
G108480 NA non-coding downstream 49575 857794 ~ 858315 (-)
G108478 NA non-coding downstream 52218 852284 ~ 855672 (-)
G108461 NA non-coding downstream 95927 811735 ~ 811963 (-)
G108451 NA non-coding downstream 136553 771111 ~ 771337 (-)
G108655 NA non-coding upstream 24487 933515 ~ 933825 (-)
G108664 NA non-coding upstream 44264 953292 ~ 958678 (-)
G108689 NA non-coding upstream 131190 1040218 ~ 1101292 (-)
G108705 NA non-coding upstream 200623 1109651 ~ 1119698 (-)
G108717 NA non-coding upstream 271554 1180582 ~ 1201681 (-)
AMCG00006247 NA other downstream 33396 838855 ~ 874494 (-)
AMCG00006245 LOC106569953,LOC106588396,LOC107101422,LOC107103722 other downstream 159154 726064 ~ 748736 (-)
AMCG00006243 NA other downstream 205950 700535 ~ 701940 (-)
AMCG00006241 NA other downstream 345475 479582 ~ 562415 (-)
AMCG00006232 LOC107694105,LOC107737194,LOC107751684,LOC107575376 other downstream 509991 393832 ~ 397899 (-)
G108708 NA other upstream 217534 1126562 ~ 1134690 (-)
AMCG00006266 NA other upstream 225873 1134901 ~ 1137952 (-)
AMCG00006274 zbtb12,LOC106570057,LOC106588515 other upstream 302258 1211286 ~ 1216184 (-)
AMCG00006277 prrt1,LOC108272790,LOC107694357 other upstream 428159 1337187 ~ 1341665 (-)
AMCG00006292 NA other upstream 435488 1344516 ~ 1637731 (-)

Expression


Co-expression Network