G108519


Basic Information

Item Value
gene id G108519
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1162864 ~ 1193441 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU135751
CATCACTGAACCGCCAGCCCCCCACAGTGCACACCCACAGCCCCGCACCGCACTGtgcgctctctcgctctctccgcTGTGGTACGGAGTTCATTACTGAaacactctctctgtctgtcttcccaGCTTTGCATATTACTGAACAAAGGGGTGTGTCGTCTGTCTCTATCTGATCCTGTTGTTTATTAGTCAGAGATTTCCTTCTGTCCTGTCCTGTAGCACatgagagagaatgagagacaTCTTGGAGATCCTTCGGTAATAAACACAACAGGacagcagacagagagagtagATTGGGCCGCCTGGCCCTGTTGCCAGCTGCCCCCTCGCCCTGTTTACACGCAGCACAGGAGCCTCTGTGTGTCTGGGTTTAATAGAGGCGGGGCTCGTTGTCACTCCAGACTTGCCCTTAATTGGACTGATGAAGACTGATTCAGCCGATCTCGGCAGGTGTGAGACGGGACTGCCATGGAAAGCAGGCAGCAGACAGGGGACCTGCAGGACCAGTAGATGAACTGGGCTGCAAAGCACATCTGACCTGACCCTCACTGGAACTGGTAGAGGCAGACAGAGcgacagagagaaagggagagactGCAGgagtaaaaaaacacacacagagagccaGAGAGCGAGTGGTCAGTTCACAGCGACTGTGTCCGTCTCCCCTCGGGTATCTACCACAGCGTCTGGTTCAGGAATGCCCATTTAATGgaaaaattaaatttacaatcaatgctaacattcatacatacatacatacataccccCCGACACACAGATTTAAACAACTGAATAATTCATACTAACGAAGAGAAGCAGTAAGCTTGAGCACAGCCAACCGGTCACCAGACACTACAGAGCCGTGCTGGGAGGGCACAGCTAGTCAGTCCTGCAGGTGTTACAGGTCCCTCTCTTTACATCCCTGCACTAACACTGGTTGAAGTTCAGCAATTAAAACTGCCCAATTAAGGAAGTGAGTTCTGGTGTGTGTCCCTGTCCACACTGCCGTAAGACTTCATAAAAGTAGTCATCATAGTTAGAGAAACGGAAGATTAGCATCTGAGCGGCCACAGCTTCCCGTGTCTCACAGATCTGAGCCCCAGAGCCGGGCCCCACGGCACCACAGCCACAGAGCCGGGCCCCAGAGCTGAGCTCCACGGAGCTGCTTCTGGCTCTGCAAACACATCACAGCACGGCAGCAGTCAATACAGATCGGCACAGCACCAGTCAATACATGCGGTACCCCTCCACTCTCACAGCACAGCGATTAGGGGAAGAGCGGCTGCATTTAATACTGTTCAGTTATTCAATACCTGGGGCTCTTTTCATTCGACTTCCTGCCGACGGCCGGCTGTTTGACCATCCCAACAACCACAGTCCTCACCACAAAGACAACGATGGCTCTGAGCAGCTGGGCTGGATGCAAAGCTGGCGAGGGTCTCTGTCCAGAACACACAAGACCCGCTTAACAACCCTAACAGCTGTGTGACCAGCATTGCACCGCAGCGCCAGAGACAGCGCCCCCTCACTCCGCCCAGGCACCACGGGGAACTGCAGCCCACCGCCACAATAATgatcatcataatattaataacgaCTTAATTAAGCTTGGCTTGGACACACCCAACACAGAGTCACCCACAGAGGATTAGTGACAGCCTGTCCGGTGAACGCAGCACCTCAGACAACTCTGTTCATCGGCCACATGGGGGGAACAACAGTATCACAGTCAGTCAACGAAGTAAGAGATCCTACtccattatgatgatgataataatacagaataagCTCACTCTCTGCCTGGAGCGGAGCAAGAGTCACCACAGGGTGTCAATACTGATGTCTGAGGCTATACCAGCAGGGCCCTGAGGAACGCCTGCGTGTGTCTGTATTAATGTGCGTCTCTGgggacctgtgtgtgtgtgtgtaggggtgtGTGTCAGACAGCCCAGACTGTGCAAGGATGTGTATgcaagtgtgagtgtgtaaatGTAGGTGTGAGTTtgagtgtgtaggtgtgtggCCAACAGCccagactgtgtgtgtatgtgtgtaggggtgtgtgtgtcaagacagaacagagagagtgtgagagtgtgtgtgtgtgtgtgtgtgtgggtgtgtgtgtcagtggagTCTCTGGTACAAAAGTGACACCAGATCGGCAGccaggtttacattttttctttatttgatataaaactcagaataaacaggaggagagggaagaggggagagagagaggacaggggaGCGGAGGGCAGGGGCTCTgtatctctgcctgtctgtctccatGTGTCCATTTATACAACTATCTATCCATCTACAGATACAGGTATGGATCTGCTATTCTACACGTCTGTGGGGTCTACATACACACCCGTCTGTCTACACAGCACGTACAGCGTCAATTAAACagcactgtctgtctgtctctctatctctacACAAGATTAATTATAAACACTACTTAAGGATAAGAGTAACTCAGACGATCTATAACTGACTGTGCGTCTCTTTaaactctccctccctctctcttgatCTAAATGAAAAACTAGTTAAGACAGacagactggacactacagtacactgacactgactggacacaagggagagagacagtgagaaagagagacacagacagtcTCCAAAATAGACTTTTCAGTTCTTAAATGAGGTTCAGTCCCCAGGCTCCGGGCAGGATGTGGCCCCAGGGCCTAGATGCTTCCTATCAGGCCTGGCCCCGCCTCGGCCCCAGTGTCTGGGCAGGCCTCCAAGCGGGCCAGCCGGCTCTGCTCCAGGGCGATGGCCTCGGCCGAGTGCTTACACTTCTCAGAGCCGCACTGGCAGGTGAAATATTTACTCTTGATGTCCCAGAACCGATCGCCA
>TU135752
CATCACTGAACCGCCAGCCCCCCACAGTGCACACCCACAGCCCCGCACCGCACTGtgcgctctctcgctctctccgcTGTGGTACGGAGTTCATTACTGAaacactctctctgtctgtcttcccaGCTTTGCATATTACTGAACAAAGGGGTGTGTCGTCTGTCTCTATCTGATCCTGTTGTTTATTAGTCAGAGATTTCCTTCTGTCCTGTCCTGTAGCACatgagagagaatgagagacaTCTTGGAGATCCTTCGGTAATAAACACAACAGGacagcagacagagagagtagATTGGGCCGCCTGGCCCTGTTTACACGCAGCACAGGAGCCTCTGTGTGTCTGGGTTTAATAGAGGCGGGGCTCGTTGTCACTCCAGACTTGCCCTTAATTGGACTGATGAAGACTGATTCAGCCGATCTCGGCAGGTGTGAGACGGGACTGCCATGGAAAGCAGGCAGCAGACAGGGGACCTGCAGGACCAGTAGATGAACTGGGCTGCAAAGCACATCTGACCTGACCCTCACTGGAACTGGTAGAGGCAGACAGAGcgacagagagaaagggagagactGCAGgagtaaaaaaacacacacagagagccaGAGAGCGAGTGGTCAGTTCACAGCGACTGTGTCCGTCTCCCCTCGGGTATCTACCACAGCGTCTGGTTCAGGAATGCCCATTTAATGgaaaaattaaatttacaatcaatgctaacattcatacatacatacatacataccccCCGACACACAGATTTAAACAACTGAATAATTCATACTAACGAAGAGAAGCAGTAAGCTTGAGCACAGCCAACCGGTCACCAGACACTACAGAGCCGTGCTGGGAGGGCACAGCTAGTCAGTCCTGCAGGTGTTACAGGTCCCTCTCTTTACATCCCTGCACTAACACTGGTTGAAGTTCAGCAATTAAAACTGCCCAATTAAGGAAGTGAGTTCTGGTGTGTGTCCCTGTCCACACTGCCGTAAGACTTCATAAAAGTAGTCATCATAGTTAGAGAAACGGAAGATTAGCATCTGAGCGGCCACAGCTTCCCGTGTCTCACAGATCTGAGCCCCAGAGCCGGGCCCCACGGCACCACAGCCACAGAGCCGGGCCCCAGAGCTGAGCTCCACGGAGCTGCTTCTGGCTCTGCAAACACATCACAGCACGGCAGCAGTCAATACAGATCGGCACAGCACCAGTCAATACATGCGGTACCCCTCCACTCTCACAGCACAGCGATTAGGGGAAGAGCGGCTGCATTTAATACTGTTCAGTTATTCAATACCTGGGGCTCTTTTCATTCGACTTCCTGCCGACGGCCGGCTGTTTGACCATCCCAACAACCACAGTCCTCACCACAAAGACAACGATGGCTCTGAGCAGCTGGGCTGGATGCAAAGCTGGCGAGGGTCTCTGTCCAGAACACACAAGACCCGCTTAACAACCCTAACAGCTGTGTGACCAGCATTGCACCGCAGCGCCAGAGACAGCGCCCCCTCACTCCGCCCAGGCACCACGGGGAACTGCAGCCCACCGCCACAATAATgatcatcataatattaataacgaCTTAATTAAGCTTGGCTTGGACACACCCAACACAGAGTCACCCACAGAGGATTAGTGACAGCCTGTCCGGTGAACGCAGCACCTCAGACAACTCTGTTCATCGGCCACATGGGGGGAACAACAGTATCACAGTCAGTCAACGAAGTAAGAGATCCTACtccattatgatgatgataataatacagaataagCTCACTCTCTGCCTGGAGCGGAGCAAGAGTCACCACAGGGTGTCAATACTGATGTCTGAGGCTATACCAGCAGGGCCCTGAGGAACGCCTGCGTGTGTCTGTATTAATGTGCGTCTCTGgggacctgtgtgtgtgtgtgtaggggtgtGTGTCAGACAGCCCAGACTGTGCAAGGATGTGTATgcaagtgtgagtgtgtaaatGTAGGTGTGAGTTtgagtgtgtaggtgtgtggCCAACAGCccagactgtgtgtgtatgtgtgtaggggtgtgtgtgtcaagacagaacagagagagtgtgagagtgtgtgtgtgtgtgtgtgtgtgtgggtgtgtgtgtcagtggagTCTCTGGTACAAAAGTGACACCAGATCGGCAGccaggtttacattttttctttatttgatataaaactcagaataaacaggaggagagggaagaggggagagagagaggacaggggaGCGGAGGGCAGGGGCTCTgtatctctgcctgtctgtctccatGTGTCCATTTATACAACTATCTATCCATCTACAGATACAGGTATGGATCTGCTATTCTACACGTCTGTGGGGTCTACATACACACCCGTCTGTCTACACAGCACGTACAGCGTCAATTAAACagcactgtctgtctgtctctctatctctacACAAGATTAATTATAAACACTACTTAAGGATAAGAGTAACTCAGACGATCTATAACTGACTGTGCGTCTCTTTaaactctccctccctctctcttgatCTAAATGAAAAACTAGTTAAGACAGacagactggacactacagtacactgacactgactggacacaagggagagagacagtgagaaagagagacacagacagtcTCCAAAATAGACTTTTCAGTTCTTAAATGAGGTTCAGTCCCCAGGCTCCGGGCAGGATGTGGCCCCAGGGCCTAGATGCTTCCTATCAGGCCTGGCCCCGCCTCGGCCCCAGTGTCTGGGCAGGCCTCCAAGCGGGCCAGCCGGCTCTGCTCCAGGGCGATGGCCTCGGCCGAGTGCTTACACTTCTCAGAGCCGCACTGGCAGGTGAAATATTTACTCTTGATGTCCCAGAACCGATCGCCA
>TU135754
CATCACTGAACCGCCAGCCCCCCACAGTGCACACCCACAGCCCCGCACCGCACTGtgcgctctctcgctctctccgcTGTGGTACGGAGTTCATTACTGAaacactctctctgtctgtcttcccaGCTTTGCATATTACTGAACAAAGGGGTGTGTCGTCTGTCTCTATCTGATCCTGTTGTTTATTAGTCAGAGATTTCCTTCTGTCCTGTCCTGTAGCACatgagagagaatgagagacaTCTTGGAGATCCTTCGGTAATAAACACAACAGGacagcagacagagagagtagATTGGGCCGCCTGGCCCTGTTTACACGCAGCACAGGAGCCTCTGTGTGTCTGGGTTTAATAGAGGCGGGGCTCGTTGTCACTCCAGACTTGCCCTTAATTGGACTGATGAAGACTGATTCAGCCGATCTCGGCAGGTGTGAGACGGGACTGCCATGGAAAGCAGGCAGCAGACAGGGGACCTGCAGGACCAGTAGATGAACTGGGCTGCAAAGCACATCTGACCTGACCCTCACTGGAACTGGTAGAGGCAGACAGAGcgacagagagaaagggagagactGCAGgagtaaaaaaacacacacagagagccaGAGAGCGAGTGGTCAGTTCACAGCGACTGTGTCCGTCTCCCCTCGGGTATCTACCACAGCGTCTGGTTCAGGAATGCCCATTTAATGgaaaaattaaatttacaatcaatgctaacattcatacatacatacatacataccccCCGACACACAGATTTAAACAACTGAATAATTCATACTAACGAAGAGAAGCAGTAAGCTTGAGCACAGCCAACCGGTCACCAGACACTACAGAGCCGTGCTGGGAGGGCACAGCTAGTCAGTCCTGCAGGTGTTACAGGTCCCTCTCTTTACATCCCTGCACTAACACTGGTTGAAGTTCAGCAATTAAAACTGCCCAATTAAGGAAGTGAGTTCTGGTGTGTGTCCCTGTCCACACTGCCGTAAGACTTCATAAAAGTAGTCATCATAGTTAGAGAAACGGAAGATTAGCATCTGAGCGGCCACAGCTTCCCGTGTCTCACAGATCTGAGCCCCAGAGCCGGGCCCCACGGCACCACAGCCACAGAGCCGGGCCCCAGAGCTGAGCTCCACGGAGCTGCTTCTGGCTCTGCAAACACATCACAGCACGGCAGCAGTCAATACAGATCGGCACAGCACCAGTCAATACATGCGGTACCCCTCCACTCTCACAGCACAGCGATTAGGGGAAGAGCGGCTGCATTTAATACTGTTCAGTTATTCAATACCTGGGGCTCTTTTCATTCGACTTCCTGCCGACGGCCGGCTGTTTGACCATCCCAACAACCACAGTCCTCACCACAAAGACAACGATGGCTCTGAGCAGCTGGGCTGGATGCAAAGCTGGCGAGGGTCTCTGTCCAGAACACACAAGACCCGCTTAACAACCCTAACAGCTGTGTGACCAGCATTGCACCGCAGCGCCAGAGACAGCGCCCCCTCACTCCGCCCAGGCACCACGGGGAACTGCAGCCCACCGCCACAATAATgatcatcataatattaataacgaCTTAATTAAGCTTGGCTTGGACACACCCAACACAGAGTCACCCACAGAGGATTAGTGACAGCCTGTCCGGTGAACGCAGCACCTCAGACAACTCTGTTCATCGGCCACATGGGGGGAACAACAGTATCACAGTCAGTCAACGAAGTAAGAGATCCTACtccattatgatgatgataataatacagaataagCTCACTCTCTGCCTGGAGCGGAGCAAGAGTCACCACAGGGTGTCAATACTGATGTCTGAGGCTATACCAGCAGGGCCCTGAGGAACGCCTGCGTGTGTCTGTATTAATGTGCGTCTCTGgggacctgtgtgtgtgtgtgtaggggtgtGTGTCAGACAGCCCAGACTGTGCAAGGATGTGTATgcaagtgtgagtgtgtaaatGTAGGTGTGAGTTtgagtgtgtaggtgtgtggCCAACAGCccagactgtgtgtgtatgtgtgtaggggtgtgtgtgtcaagacagaacagagagagtgtgagagtgtgtgtgtgtgtgtgtgtgggtgtgtgtgtcagtggagTCTCTGGTACAAAAGTGACACCAGATCGGCAGccaggtttacattttttctttatttgatataaaactcagaataaacaggaggagagggaagaggggagagagagaggacaggggaGCGGAGGGCAGGGGCTCTgtatctctgcctgtctgtctccatGTGTCCATTTATACAACTATCTATCCATCTACAGATACAGGTATGGATCTGCTATTCTACACGTCTGTGGGGTCTACATACACACCCGTCTGTCTACACAGCACGTACAGCGTCAATTAAACagcactgtctgtctgtctctctatctctacACAAGATTAATTATAAACACTACTTAAGGATAAGAGTAACTCAGACGATCTATAACTGACTGTGCGTCTCTTTaaactctccctccctctctcttgatCTAAATGAAAAACTAGTTAAGACAGacagactggacactacagtacactgacactgactggacacaagggagagagacagtgagaaagagagacacagacagtcTCCAAAATAGACTTTTCAGTTCTTAAATGAGGTTCAGTCCCCAGGCTCCGGGCAGGATGTGGCCCCAGGGCCTAGATGCTTCCTATCAGGCCTGGCCCCGCCTCGGCCCCAGTGTCTGGGCAGGCCTCCAAGCGGGCCAGCCGGCTCTGCTCCAGGGCGATGGCCTCGGCCGAGTGCTTACACTTCTCAGAGCCGCACTGGCAGGTGAAATATTTACTCTTGATGTCCCAGAACCGATCGCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135751 True 2898 lncRNA 0.51 2 1162864 1193441
TU135752 False 2877 lncRNA 0.51 3 1162864 1193441
TU135754 False 2873 lncRNA 0.51 3 1162864 1193441

Neighbor

gene id symbol gene type direction distance location
AMCG00006263 NA coding upstream 14951 1143777 ~ 1147913 (+)
AMCG00006264 NA coding upstream 55148 1102780 ~ 1107716 (+)
AMCG00006262 NA coding upstream 64093 1089591 ~ 1098771 (+)
AMCG00006261 NA coding upstream 76877 1077293 ~ 1085987 (+)
AMCG00006257 NA coding upstream 123584 1026203 ~ 1039280 (+)
AMCG00006270 NA coding downstream 6380 1199821 ~ 1213094 (+)
AMCG00006269 NA coding downstream 72091 1265532 ~ 1272008 (+)
AMCG00006282 NA coding downstream 167169 1360610 ~ 1415163 (+)
AMCG00006281 NA coding downstream 230966 1424407 ~ 1433866 (+)
AMCG00006287 NA coding downstream 343466 1536907 ~ 1545850 (+)
G108516 NA non-coding upstream 91092 1071294 ~ 1071772 (+)
G108515 NA non-coding upstream 92093 1070327 ~ 1070771 (+)
G108513 NA non-coding upstream 95139 1067036 ~ 1067725 (+)
G108496 NA non-coding upstream 229039 933515 ~ 933825 (+)
G108322 NA non-coding upstream 372031 789976 ~ 790833 (+)
G108540 NA non-coding downstream 7853 1201294 ~ 1201681 (+)
G108555 NA non-coding downstream 24438 1217879 ~ 1221424 (+)
G108580 NA non-coding downstream 150111 1343552 ~ 1343755 (+)
G108584 NA non-coding downstream 156610 1350051 ~ 1397427 (+)
G108587 NA non-coding downstream 159377 1352818 ~ 1554665 (+)
AMCG00006256 NA other upstream 158993 985873 ~ 1003871 (+)
AMCG00006246 slc39a7,LOC107395789,LOC106588393 other upstream 307144 846561 ~ 855720 (+)
G108319 NA other upstream 371802 774809 ~ 791062 (+)
AMCG00006236 NA other upstream 510724 644718 ~ 652140 (+)
AMCG00006231 NA other upstream 728959 426976 ~ 433905 (+)
AMCG00006276 NA other downstream 85019 1278460 ~ 1286052 (+)
AMCG00006275 NA other downstream 93388 1286829 ~ 1315558 (+)
G108585 NA other downstream 156942 1350383 ~ 1429987 (+)
G108626 rps5,LOC107086176 other downstream 443956 1637397 ~ 1814610 (+)
AMCG00006294 NA other downstream 542491 1735932 ~ 1741336 (+)

Expression


Co-expression Network