G108555


Basic Information

Item Value
gene id G108555
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1217879 ~ 1221424 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU135793
AGCCTTTGTCAGAGCTGCTGGCCGATACTGTCTAGCGGGAAGCTCTGACGGCTACTTTCGCCACAGGCacggagagagaggaggagcgAGGAGAgcaggggaggaagaggaagatgaGGAGGAAGAGTCAGTGGCCATAGTGGGCTCTACTTCCTGTCCGAGCGGCATTGCGGGGGCCGCACCGGTGCTGGCTGGGGCAGTGACTGAGGGCGGGGCAGTATTAAGCGTCCAGTCTTGCCACCCTGACGCAGGCTGGGTGTCAGTGTTGGGGTCCCTGTCCTGCGAGCGCTGCGGGGTCCTCTTCCCCTCCCCGGAGTCGCTGTCCGCCCACTCCCGCGCCGCCCACTTCCTGTTCGTCTGCCCCCGCTGCGGCAAGCAGTTCAACCACAGCAGCAATCTGAACCGCCACATGAACGTGCACCGCGGGGTCAAGTCCCACCGCTGCCCCCTGTGCCTCAAGACCTTCACCCAGAAGTCCACGCTGTCAGACCACCTGAACCTGCACAGCGGCGAGCGGCCCTACCGCTGCTCCTACTGCCACGCCCGCTTTGCCCACAAGCCCGCCATCCGCCGGCACCTGAAGGAGCAGCACGGCAAGACCACGGCACAGAACAGGGAGAGGGGTGGGGACTGAGAGAAGGGTGCAGAGAGACTGACCAAAACGGAGAGGGGGAGTGGGCATGGACAGAATGATCGATACACTGATGACCTTGTCCCTGCACAGCAGCAGAGTCGATTTGAAGCCCCATCTGGCCGTTGCACTGGTACAGCAGACAGTACATCGATAGAGGACTAACTCAGGGTTACCCTCCAGAGCAGCTGACACAGACTGCGTGACAGTATCACATCCTGGGGAGTTAACATTACTGCAGGAGACACTATCCATCGCGCTGTGTACTCCTCTCATCAAGTTTCCTCCTCTCTATACATCTCCTGGCTGTAGTGTCTCCCCCTGTTCTCCTCCACCAGCCTGTCGATCTTCTCCAGCAGCTCTGTCACCTCTCTCTGACTGGGGTGGAACACATGGTCAAAGACGTGGTACCTGTTCCCACACCTGCCAACCAGCTGTTTCAGGGCTAGGATACACTGCTGCACATACTCTAGCAAGGCTGGGGCATGGCTCTGAGCAGACTTTACGTAGTCCGAGTCACAGGTCCGAATGATCTCTGGGGCATCCGTGTCAGGGTTCTGAATGAGATTCTGAATGGTTTGCTTTCCCACTGTGTGTCCATCAGTGATCAGGACCAGTGTGTACTTCAGCACCTCCTCCCCAAAGATctgctgcagtgtgtccggcTCGGAGGTATTTGTGGAGAGTAAGATAATATCAGCCACCAGGAGGAAGATGTGGGGCCCCGGGGCCGAGAGGTCCACACATCGTGCTGCCTCCTTCATCGCTTCCGATTGATTTAGCCGCGTGTCTGGAGTGGTGACCACAGTGACCCGTCTCCCATCAATCAGAGCCTCTTGTCTCTCACACTGATGTGGACATAATTCAAACTGCCCTCTGCCCAAAATGGCGTTTGCAGCAGATCCTTTACTACattggtttcctcccaccagtGCGATCCTCCGGTGTCTCCTCTCCAAGCCTGCCCCTGCGGAGAGAGAACGGTCTGTCACAGTGCAATCAGACTCAGGGAGGAGAATCGCTGAGTAGATGGACACAGTCCACTACtccactggactggactggactctggCCATCTCCACTCTGCAGCACAACAGACACACTGACCATTGATTATACAGTCAAGTCTGATTCATGCTTCTTTGAAGATTCACGTAAACGTCTTTGCGTAGCGCTGCAGAGAAGGGGTTTCTGGGCAAGCATAGCTCGTAGAGGAGCCGACACACACACCTCCGAAATCTCAACTACGAGTTGTGCGTCTCTGTGGTCCTGTTCGTCAAACAAACCCTGACTGGTTGAGCAGGGAGGGTCTGAGAGCCGTGGCCAGTCACTCAGCTGTGCTTATTGGCAAGTGGTGGGTCGACTGGTGGGCAGTGTATGGCTGTAGGagctgcagcaggtcagaaaaACGTTGTGGGGACATCTGaaaggatttaaaatgcatctcttcATCCACTAAACACATTTGTTGCACTGACAGACTGTTCTTCCCTTTATCTGGCCTGGACAATGTGGGGGAAGAATATATATCCTAGTCCgtctttgtgtgttgtgtgataaCAATCCAttcttggttatcagcagctcacattcctttcttgcaacataTTAACTGCAAATAACCTTCCAATGCAGCTGGCAatttagaggttaatgattattattcatgagtaatgattaatactgatgagatgggaaggcttagttcaGAATGCTAATAaaatcactgctatagttattagaaattACCAGACACAGTAACAAATTAAgccccttgagggtatgtccACTTCCTGTTCGTCTGCTCCTGCTGCGGAAGGTCCCAGAAGGGCTATACAGATTTCTACTatttactgtactatactatttAGGGATATATAGCTTTGTATTATCTTGAAAAGTGTCATACTTGCGTAATACTTCCGagttctgtgttgtgctgttcttCCTGTGcatgtaataaattctgattagaactgccGACTCCTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135793 True 2622 lncRNA 0.53 2 1217879 1221424

Neighbor

gene id symbol gene type direction distance location
AMCG00006270 NA coding upstream 4785 1199821 ~ 1213094 (+)
AMCG00006263 NA coding upstream 69966 1143777 ~ 1147913 (+)
AMCG00006264 NA coding upstream 110163 1102780 ~ 1107716 (+)
AMCG00006262 NA coding upstream 119108 1089591 ~ 1098771 (+)
AMCG00006261 NA coding upstream 131892 1077293 ~ 1085987 (+)
AMCG00006269 NA coding downstream 44108 1265532 ~ 1272008 (+)
AMCG00006282 NA coding downstream 139186 1360610 ~ 1415163 (+)
AMCG00006281 NA coding downstream 202983 1424407 ~ 1433866 (+)
AMCG00006287 NA coding downstream 315483 1536907 ~ 1545850 (+)
AMCG00006286 NA coding downstream 351704 1573128 ~ 1574818 (+)
G108540 NA non-coding upstream 16198 1201294 ~ 1201681 (+)
G108519 NA non-coding upstream 24438 1162864 ~ 1193441 (+)
G108516 NA non-coding upstream 146107 1071294 ~ 1071772 (+)
G108515 NA non-coding upstream 147108 1070327 ~ 1070771 (+)
G108513 NA non-coding upstream 150154 1067036 ~ 1067725 (+)
G108580 NA non-coding downstream 122128 1343552 ~ 1343755 (+)
G108584 NA non-coding downstream 128627 1350051 ~ 1397427 (+)
G108587 NA non-coding downstream 131394 1352818 ~ 1554665 (+)
G108595 NA non-coding downstream 251948 1473372 ~ 1474967 (+)
G108602 NA non-coding downstream 265888 1487312 ~ 1487870 (+)
AMCG00006256 NA other upstream 214008 985873 ~ 1003871 (+)
AMCG00006246 slc39a7,LOC107395789,LOC106588393 other upstream 362159 846561 ~ 855720 (+)
G108319 NA other upstream 426817 774809 ~ 791062 (+)
AMCG00006236 NA other upstream 565739 644718 ~ 652140 (+)
AMCG00006231 NA other upstream 783974 426976 ~ 433905 (+)
AMCG00006276 NA other downstream 57036 1278460 ~ 1286052 (+)
AMCG00006275 NA other downstream 65405 1286829 ~ 1315558 (+)
G108585 NA other downstream 128959 1350383 ~ 1429987 (+)
G108626 rps5,LOC107086176 other downstream 415973 1637397 ~ 1814610 (+)
AMCG00006294 NA other downstream 514508 1735932 ~ 1741336 (+)

Expression


Co-expression Network