G108595


Basic Information

Item Value
gene id G108595
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1473372 ~ 1474967 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU135850
tttttttcatttttatatttattattatatcattataataataagacacTTCTCTGCTCATACATTGCTCCcttgaacttaaaaaaaaaaaaaaaaaaaaaaaagacgggGGGGGAATGTAAGCTGGGACTTATATACATACGTGTGTCTGTATGCATgtgcacacatacaaatacacatacacaggtGTGTTGGTGTTTGCATGTGAGAGAAAAATAGTGGATATACATAGAAAGATACCGTCTGCAGCACTTCACAGAAACTGAGCAGCTTTTAAAAACGCACGCATACACGCACACTCAATGAAACTTGAGCCGCGCCCAAGACTAACTGAAAGCTTTGAATCTGAAAATCCCTTGCCAACTTATTCccaaacaaaagtgtgtgtgtgtgtgtgtgtcagtacacaccatggatatttaaaaatgaaactccGCTTTATTCAGAAACTAAACCatcactgaaacagaaacccGCATTTTTCTCTACTCTCCCTCCGTCCCCGCACACGACCGCCTCTCCGAGCCCGTTTCCCTGGCTGTGTGTATGCgagcgtctgtctgtctgggttgAGAGCAGAAGCAATGCAACAATTCCTGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaaaaaaaaaaaaacccacacacaccacactgacTCTGGAGTTCAAAAAACCGCAAAGTACATCTGAAACGGACGCGGAAGATTCCTCCCGTCGTACGACAATGACCGACCTAGAGCCTATTCCTCCACCATGGTGATCACAAAGCAGGAGGAGCGGAGCCAGCATCGCCCACAGTGCCTCAGCGTCGGAGAAGTTCAATACTTCACAGACCGCCCCGggcctcctgctgctgctctgctCCTCGGCTTTTGTGCTTGCCGCTTCTCTGGCACTTGTGTTCTCTCACAGGCTGCTGCTATACAACCCCGGCTCCGATAGAGGAaacgcacagagagacagaggaggaaagaaaatgtgaacgGACACGGGCAGAGAGGGAGGTACCTTTgggaagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatgtatatatacacatagatGAAGGCcaggaaagagggagggagcaaGAGTGAGTGTACAACTCCGTATCTATGAGGATGTATAATGATGGGCTAATATGCGGGGTCGGGGGGGGCAGGGTTTGTGGAGATCGGGGAGCTGGGACTCCGATCGTTCTTCAGTTATGGTAATTCCACTCGTACGAATGCatgttcttgtttcttttaaaagcgTGGTTGGTTCAGGACAGGGAGCGGACGCTTCTCTTCTGGAGCGCTCACTTCCTGTTCTTGGGAGAGGGCCAGTTGTTACCGTTGGCACTGCCGCCTCCATTTCCACGGCGATCTCCGCGGTTTCcacctcctccg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135850 True 1419 lncRNA 0.46 2 1473372 1474967

Neighbor

gene id symbol gene type direction distance location
AMCG00006281 NA coding upstream 39506 1424407 ~ 1433866 (+)
AMCG00006282 NA coding upstream 58209 1360610 ~ 1415163 (+)
AMCG00006269 NA coding upstream 201364 1265532 ~ 1272008 (+)
AMCG00006270 NA coding upstream 260278 1199821 ~ 1213094 (+)
AMCG00006263 NA coding upstream 325459 1143777 ~ 1147913 (+)
AMCG00006287 NA coding downstream 61940 1536907 ~ 1545850 (+)
AMCG00006286 NA coding downstream 98161 1573128 ~ 1574818 (+)
AMCG00006288 NA coding downstream 163092 1638059 ~ 1647130 (+)
AMCG00006289 csnk2b,LOC101472534,LOC106588218,LOC101175345,LOC107677476,LOC106517726 coding downstream 185671 1660638 ~ 1661843 (+)
AMCG00006293 NA coding downstream 240516 1715483 ~ 1721110 (+)
G108584 NA non-coding upstream 75945 1350051 ~ 1397427 (+)
G108580 NA non-coding upstream 129617 1343552 ~ 1343755 (+)
G108555 NA non-coding upstream 251948 1217879 ~ 1221424 (+)
G108540 NA non-coding upstream 271691 1201294 ~ 1201681 (+)
G108519 NA non-coding upstream 279931 1162864 ~ 1193441 (+)
G108602 NA non-coding downstream 12345 1487312 ~ 1487870 (+)
G108605 NA non-coding downstream 19397 1494364 ~ 1495708 (+)
G108632 NA non-coding downstream 176088 1651055 ~ 1651459 (+)
G108831 NA non-coding downstream 414560 1889527 ~ 1890035 (+)
G108832 NA non-coding downstream 416069 1891036 ~ 1892425 (+)
G108585 NA other upstream 43385 1350383 ~ 1429987 (+)
AMCG00006275 NA other upstream 157814 1286829 ~ 1315558 (+)
AMCG00006276 NA other upstream 187320 1278460 ~ 1286052 (+)
AMCG00006256 NA other upstream 469501 985873 ~ 1003871 (+)
AMCG00006246 slc39a7,LOC107395789,LOC106588393 other upstream 617652 846561 ~ 855720 (+)
G108626 rps5,LOC107086176 other downstream 162430 1637397 ~ 1814610 (+)
AMCG00006294 NA other downstream 260965 1735932 ~ 1741336 (+)
AMCG00006366 NA other downstream 1767970 3242937 ~ 3252080 (+)
AMCG00006368 NA other downstream 1799815 3274782 ~ 3286179 (+)
G109309 NA other downstream 1886387 3361354 ~ 3365565 (+)

Expression


Co-expression Network