G108689


Basic Information

Item Value
gene id G108689
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1040218 ~ 1101292 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU135972
CAGGCACACCAAATAAACTCTCAGGTACAGGAGCTCTATAGTAATAGGTTTATTAatgataaaacacaataatgacCAGCCCAATTAAACTGTCACTGACCCCTGCAGAACTGAACACTTCACTTCCACTGAAGATGTGTTTTACCCTTGGGGACACTGCAGTTCAACatgaaacaggaaaaaagaCAGGGAGTgtgggaaggagagagatgcCTTTCTGCTCTTCACCAGTTTCCAGGTGGAGCATCGCACTCACTTCCTGTAGCTCATTCTACAAGCCAGCTTAGATCatttctccccccctctctctgcgcTCCACCATTTGTGACAGAGGTAGAAATTAATTGCAATAGAATTAGATTATCACTCTCGAGGTGAATGAAGTTATCAAAAGTGCTTTCAGAGCTTTCAGGCACATAGTAGAATACTAGAAACCTGAGCCCTAATGCAAGATAAATGGAAAAccttcaaatatatacatttaaaataacagaaaaaaatgtaagggtCCATTCACACTACGGTTCGATGAGGTCAGTTTGGGGCTGTGTGTGAAACCTCCGATACTGACAAACGCACCAGGATGCAGATCAAACCAAACGGGCCGAGACCCTGGAACGCTGCTCTTGGctcatttgaaaggaaactcaCTGCTCGAGCCAGTTACTCTGGGAATGTGAAAGACAATGCATTGTGGTTCACTTGGAAACGAACCGCTGCACACAGGTGTGAAACAAACCCAACCTCAACTGAAAAACTCACATGCATTGCATGTGAACCAGGTGAGAAATGCCCTCGATgctgtggcagggagggggttaacatctcatggactgcaggtggttgggGTTGATTGTCACTAATTGGTTAATCAACCCCGGCCACCTGCTATAAAAGGAGGCCTCAGCCTTACAGAGCCTACCAAGCAGGAAGGTTATCGGTTTGGTGCACTGCTTCGTTTCACAGTGCAGTCAGTGGCCATCATGTGTATTTTGGTTtgtgcacttttgttttggacCTCCtgcctgtttattttgtgtgtttctttaataaaagtCTAGTTTTGTGTACCTGCAGCCTGACTCAGAGCCACCCATTCCTGGCTATCCTGTCATAGGTGCAAATACAAACTGCGGGCATTTTCACACCcagttcacttgcacacagacTTCTTTCGGTTTAGGTTCACTTTGTTTCACACcaggaaaatgtaatcaaacGTGAGTTTATATTAAAGTGAAATCAACCGCGGTTCAATCCGCATCAAACCATAGGTGTGAAAGgacaatatataattaaaagccACAAGTGTCTCAGCCGAGTGAGCACAGTACACATATAACAAAATATCTCCTGTTCTCAGCTGCCCACTTCAACAGGTCAAATATCAATtttgtaaaacacacaatagTTACAAAAAaccagaaacacaaataaagatTCATCAACATATACAATCTATCTTTCTTAACATATTCGGCTTGGGAACTTTAGTATCCATAAGCCATGTGGAGGAGTTTGACTTTCACTCATGTGATCACATTCAAATATGATTCTATTGCTTCACACATTAATACTTATCTTTTATAATCTTCTGTTACTGATACACTATTTTAATTCCATAGTATTTTAGCTcttattttaagtaatgtacattaagtaatttattcaatCTAATCTTCATTGTATCATAGTCTCTTACATATCCAAACAGTCTGTGCTGTAGTTTCTGTTGAAGCCTTGAAGCCTGATTGGGCTTTGAatctttgttattgttgctaTAAATCTTTACTGTCcaattattttcatgtattaaacaaatctgTCCTGTATATTGTGACTTTAAAATCTGTGTGTACTGTACAAGAACAGTTTAAACCCATTTTACttcactgtaataaaatatgtcCTGTAGTCTCTGACTGTATTACCCGTCTGTGTTGTCGTTTAAAACAATCCATTTCGGTCCCTATCGGAGTGTGTCTGGATACTGCGGCCTCCTGGTAACAGCCCAGAACCTGCATCTCTCGAGTGTGGTCCGGGGTTCCAGGAGGGGCAGGGGAGGGGTGTGAGGAAGGGCCTGGAGGGACGTTGTTAAGGGAAGATCTGACTGATTACGCAATGGCAAGGTGGGGGAGGGCGTCTTTCAAAGCATTGCCATTGGTTGAAGATGGAGTACCATCACAGTTGAGCACAGACATCAGGGGCTGCTCCACTGACATGCctggaggagagggggagactgATTTAGTTCAGTTTAATAAACGAGAATGAGGATGAATACAGATAAAATTCAAAAGCTGAGAGTGTACCGATGTCATTTGGGTTGTTCCCATTTGCATTTCCCTTGCTGTTGGATATCAGGTCCACTGACacaacagagagggagagagaaagagaggggttTGGACATcagactggacactacagtacagtggtGCCCAAACACAGCCCCTACAGTAAGTATTGTCCGTCACCCTAAATTGCCTAAATTAAGCCCTCGAGGACTgtccattaacactgactgactggacaatacggtacattaacactgactgactgactggacactacagcacattaacactgactggacactacagcacattaacactgactgactggactcTACAGct
>TU135974
CAGGCACACCAAATAAACTCTCAGGTACAGGAGCTCTATAGTAATAGGTTTATTAatgataaaacacaataatgacCAGCCCAATTAAACTGTCACTGACCCCTGCAGAACTGAACACTTCACTTCCACTGAAGATGTGTTTTACCCTTGGGGACACTGCAGTTCAACatgaaacaggaaaaaagaCAGGGAGTgtgggaaggagagagatgcCTTTCTGCTCTTCACCAGTTTCCAGGTGGAGCATCGCACTCACTTCCTGTAGCTCATTCTACAAGCCAGCTTAGATCatttctccccccctctctctgcgcTCCACCATTTGTGACAGAGGTAGAAATTAATTGCAATAGAATTAGATTATCACTCTCGAGGTGAATGAAGTTATCAAAAGTGCTTTCAGAGCTTTCAGGCACATAGTAGAATACTAGAAACCTGAGCCCTAATGCAAGATAAATGGAAAAccttcaaatatatacatttaaaataacagaaaaaaatgtaagggtCCATTCACACTACGGTTCGATGAGGTCAGTTTGGGGCTGTGTGTGAAACCTCCGATACTGACAAACGCACCAGGATGCAGATCAAACCAAACGGGCCGAGACCCTGGAACGCTGCTCTTGGctcatttgaaaggaaactcaCTGCTCGAGCCAGTTACTCTGGGAATGTGAAAGACAATGCATTGTGGTTCACTTGGAAACGAACCGCTGCACACAGGTGTGAAACAAACCCAACCTCAACTGAAAAACTCACATGCATTGCATGTGAACCAGGTGAGAAATGCCCTCGATgctgtggcagggagggggttaacatctcatggactgcaggtggttgggGTTGATTGTCACTAATTGGTTAATCAACCCCGGCCACCTGCTATAAAAGGAGGCCTCAGCCTTACAGAGCCTACCAAGCAGGAAGGTTATCGGTTTGGTGCACTGCTTCGTTTCACAGTGCAGTCAGTGGCCATCATGTGTATTTTGGTTtgtgcacttttgttttggacCTCCtgcctgtttattttgtgtgtttctttaataaaagtCTAGTTTTGTGTACCTGCAGCCTGACTCAGAGCCACCCATTCCTGGCTATCCTGTCATAGGTGCAAATACAAACTGCGGGCATTTTCACACCcagttcacttgcacacagacTTCTTTCGGTTTAGGTTCACTTTGTTTCACACcaggaaaatgtaatcaaacGTGAGTTTATATTAAAGTGAAATCAACCGCGGTTCAATCCGCATCAAACCATAGGTGTGAAAGgacaatatataattaaaagccACAAGTGTCTCAGCCGAGTGAGCACAGTACACATATAACAAAATATCTCCTGTTCTCAGCTGCCCACTTCAACAGGTCAAATATCAATtttgtaaaacacacaatagTTACAAAAAaccagaaacacaaataaagatTCATCAACATATACAATCTATCTTTCTTAACATATTCGGCTTGGGAACTTTAGTATCCATAAGCCATGTGGAGGAGTTTGACTTTCACTCATGTGATCACATTCAAATATGATTCTATTGCTTCACACATTAATACTTATCTTTTATAATCTTCTGTTACTGATACACTATTTTAATTCCATAGTATTTTAGCTcttattttaagtaatgtacattaagtaatttattcaatCTAATCTTCATTGTATCATAGTCTCTTACATATCCAAACAGTCTGTGCTGTAGTTTCTGTTGAAGCCTTGAAGCCTGATTGGGCTTTGAatctttgttattgttgctaTAAATCTTTACTGTCcaattattttcatgtattaaacaaatctgTCCTGTATATTGTGACTTTAAAATCTGTGTGTACTGTACAAGAACAGTTTAAACCCATTTTACttcactgtaataaaatatgtcCTGTAGTCTCTGACTGTATTACCCGTCTGTGTTGTCGTTTAAAACAATCCATTTCGGTCCCTATCGGAGTGTGTCTGGATACTGCGGCCTCCTGGTAACAGCCCAGAACCTGCATCTCTCGAGTGTGGTCCGGGGTTCCAGGAGGGGCAGGGGAGGGGTGTGAGGAAGGGCCTGGAGGGACGTTGTTAAGGGAAGATCTGACTGATTACGCAATGGCAAGGTGGGGGAGGGCGTCTTTCAAAGCATTGCCATTGGTTGAAGATGGAGTACCATCACAGTTGAGCACAGACATCAGGGGCTGCTCCACTGACATGCctggaggagagggggagactgATTTAGTTCAGTTTAATAAACGAGAATGAGGATGAATACAGATAAAATTCAAAAGCTGAGAGTGTACCGATGTCATTTGGGTTGTTCCCATTTGCATTTCCCTTGCTGTTGGATATCAGGTCCACTGACacaacagagagggagagagaaagagaggggttTGGACATcagactggacactacagtacagtggtGCCCAAACACAGCCCCTACAGTAAGTATTGTCCGTCACCCTAAATTGCCTAAATTAAGCCCTCGAGGACTgtccattaacactgactgactggacaatacggtacattaacactgactgactgactggacactacagcacattaacactgactgactggacactacagcacattaacagatttgttttatttttttcaaaatgcacatCGAGTGTGATTTCTTTCTGGAGGATTCATTCAGATCAACTATTCAGCTGGCACCAGATATTTTACCATTGCCTTTGGGGTTTCCATTGCTCCCAGATATCAGGGGGCTCTGCACTGACATGCCTgagacacggagagagagaaaaattaaGGAATGAAGAGTGAGAGGAAATTCCCTTATTCTATTTCATataaggaaaacattaaaaagaaaacataaaatcaacaGATTAACGACCACCAAtgctcccctcctccccctgccATGTTACCGTTGCCATTGTAGATTTTTCCATTTGAGGTGCCATTCTGCTGCCCGGGATTGTGCTCTGTGACACACAAAGAGATGGACAGTCAGGGGGTGCAGGACACTGGCAATGCAGAGAAATGACAAGCATCCTTAGAGCCACAGGGAAGCCATGCTGAGAATCAGACCCAATACTCACGCTGAGGGACGGCTTCAGACTTCTGTGAACACTGGaacactgcagcacagagagacaaCAGGACACGGTCAGAGACGACATgggccagcgctgtggggactggTATAGTGTaatgtagtacagtgtagtgtagtgcccAGACTGGAGTGAGTCATGTGTGGACTATAGTGGACTATAGCATAGCATAGTGTccagactggagcagcactGTGTGACTATAATATAGTGTAGGGCCCATACTGGAGTCAGTgttgtgtggactatagtataatataatatattcaagGTATGACgtgtaaaaacattaaaaaaacaattgcaaattAGTTAATTCAAAGAGTTCCTACCCAGAATTTTCTTCTTATACAGGACGAAAGTCACAGCTACAGCACACACAACCAGCATCATAACTATAAGGCCTCCAATAACTGCAGCACCACAACAAGAGTTCCTGTTGCAGTCCAGCACGTCCCCCCCCATTTCTTGATGATGGGTGTAGTCAGACTCCTGTGCTGGACCTTGCAGCTGTAGCCCTCTTTGTCAGACTCGGGGATCTCCAGCCACTTCCTCAGCTGGTAGGTCTCGTCTCCGTTGGACCTGACCCCACTGGACTGCACCCCGTCTGCCTCCCCCAGCATCTTATCCTGTTTGAACAGATCCACTTGGACATCCTTGGGGTAGAATCCAGTGGCCAGACAAGACAGCGCGAGACGGCCAGGGTTCAGAGAGAACTTGGCAAAGACGTGGACATCAGggggag
>TU135975
GAACTTGGTGAGCCAGTCCACACACTCCCGCTCCAGGTAGCCCTTGGTGTACTGGTTCAGGATCTGCTCGTTGTCCCACTTGCGTTTGGTCGGCTCGGCCGGGGGGACGGGCGCCACCCACTGAGATCTGGACTCGTCGAAGGACAGGAAGTCGGCGCCGTCGTAGCTGTACTGGTCGTAGCCACGAATGAACTTAACGCTGGAGTCTTCACTGAAATTGATCTCACAGCCGTGTCTCCACTGGAGGATGTGCagatctg

Function

NR:

description
PREDICTED: 2-phosphoxylose phosphatase 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135972 False 2636 lncRNA 0.43 2 1040218 1098717
TU135974 True 3852 lncRNA 0.44 2 1094724 1098717
TU135975 False 260 lncRNA 0.58 2 1092864 1101292

Neighbor

gene id symbol gene type direction distance location
AMCG00006255 NA coding downstream 139373 896978 ~ 900845 (-)
AMCG00006248 rxrba,rxrb,LOC107729870,LOC107566635,LOC107751683 coding downstream 254633 774474 ~ 785585 (-)
AMCG00006244 NA coding downstream 319825 711832 ~ 720393 (-)
AMCG00006239 NA coding downstream 353659 676584 ~ 686559 (-)
AMCG00006242 NA coding downstream 364458 665586 ~ 675760 (-)
AMCG00006265 NA coding upstream 55435 1156727 ~ 1160200 (-)
AMCG00006268 rnf5,LOC107694772 coding upstream 62008 1163300 ~ 1170846 (-)
AMCG00006267 NA coding upstream 70389 1171681 ~ 1179064 (-)
AMCG00006271 NA coding upstream 80418 1181710 ~ 1191081 (-)
AMCG00006272 NA coding upstream 91978 1193270 ~ 1199994 (-)
G108664 NA non-coding downstream 81540 953292 ~ 958678 (-)
G108655 NA non-coding downstream 106393 933515 ~ 933825 (-)
G108491 NA non-coding downstream 131190 907890 ~ 909028 (-)
G108484 NA non-coding downstream 150416 889073 ~ 889802 (-)
G108480 NA non-coding downstream 181903 857794 ~ 858315 (-)
G108705 NA non-coding upstream 8359 1109651 ~ 1119698 (-)
G108717 NA non-coding upstream 79290 1180582 ~ 1201681 (-)
G108682 NA non-coding upstream 190746 1292038 ~ 1306880 (-)
G108750 NA non-coding upstream 219406 1320698 ~ 1321213 (-)
G108752 NA non-coding upstream 227510 1328802 ~ 1332044 (-)
AMCG00006247 NA other downstream 165724 838855 ~ 874494 (-)
AMCG00006245 LOC106569953,LOC106588396,LOC107101422,LOC107103722 other downstream 291482 726064 ~ 748736 (-)
AMCG00006243 NA other downstream 338278 700535 ~ 701940 (-)
AMCG00006241 NA other downstream 477803 479582 ~ 562415 (-)
AMCG00006232 LOC107694105,LOC107737194,LOC107751684,LOC107575376 other downstream 642319 393832 ~ 397899 (-)
G108708 NA other upstream 25270 1126562 ~ 1134690 (-)
AMCG00006266 NA other upstream 33609 1134901 ~ 1137952 (-)
AMCG00006274 zbtb12,LOC106570057,LOC106588515 other upstream 109994 1211286 ~ 1216184 (-)
AMCG00006277 prrt1,LOC108272790,LOC107694357 other upstream 235895 1337187 ~ 1341665 (-)
AMCG00006292 NA other upstream 243224 1344516 ~ 1637731 (-)

Expression


Co-expression Network