G108705


Basic Information

Item Value
gene id G108705
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1109651 ~ 1119698 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU135995
ATTTCCTTATCTTCATGTATATGTTGAAAGTATCACATtggatttcaatatttttattttagtatctcAGATCTTGCTTAAATTCTGTCAAACATTTGGATATTTCAGGAACCTCGCAAATATGAACTTTATGCAGTTTGCAGACACATAGGGAGTTACAGAGGTGGACATTATAAAGCCTTTATCAAGTCATTTGAAGATGACAACTGGTACAGCTTCAATGATTCTCAAGTTCTTAAGGATGGAATAGATGGTTCAGAAAACATTAAGCAGCACAATGCCCTATTCAAGGTTGAGTCACAGGGATATGTTTTTGCTGCAGGAAAATGCGAAGATTACAGAGGACAGTCAGATTCCACTGCTCCAGGAGACTATaacaatTTGACCATCACAGAAAATACACATACGCAGTACATAAGATGTCCAGATGCGTATTTGGTTATGTACAGGCTAATAATGGAAGAGCAGGACCAAGAAGCTTTAAACCAAAGTCAGCAGAAAGCAGATATGCAGAATTCTGTGAGTCCTGATATTGAATATCCAGTGGGGAAGGAGGAGAAAGCATCCAATCCATTAAACAAGCAGAGGCAGAAGAAAGGTGCAAGGTCAAAAAGGAATCGGAACAGGAAGAATAAGAAATCTaaaaagaggaggaagaagagaaaataatgttaCCACTTTCTGACTGCATTTTGCTCTTAACAGTAATTAGCTTTTTTATGTGGTGTCAGAGTGTGTGGATCTATGCACAACCATAACAGTGTCCCTATAGCATTGCAATTGCTAATAGATATTTCTGGCCAAagttacagttttaattatagTGGTATGGTAGCATTGGAACATATTTATGACTCCTTAAAAGATTGGGGAGACCCAAGGAACACTAGATTCAAACACAAAGAGATGCTTTATATGGAATTAATTGGGAATTATCTATATTTTAAGTCTTCACCATAATGTAAACctcaaattgatttaattgatttaatggaCAGTTTcacaaatagaaataatacattgccACTTATGGGAAGCATGTGATCTGAATCAAAATTGAAAATAGGTTATTGTACTTTGATTTAATctattgttttgatgttttgtaatattttttttatttacctagtttgaaaatgtattgatgtattagataaatacattttattgttttgttttttgtttactgtgtcCATAGAGATAGTACACAAGTTGTGGGACTGCACTGGAAAAGGTTTGACTACCACAATGAGAAtgctaaaatgaaatgttaataaaatatatatttaagata

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135995 True 1294 lncRNA 0.34 7 1109651 1119698

Neighbor

gene id symbol gene type direction distance location
AMCG00006258 psb7,LOC106569939,LOC106588382 coding downstream 36357 1068054 ~ 1073294 (-)
AMCG00006260 NA coding downstream 59923 1048178 ~ 1049728 (-)
AMCG00006259 NA coding downstream 62141 1042862 ~ 1047510 (-)
AMCG00006255 NA coding downstream 208806 896978 ~ 900845 (-)
AMCG00006248 rxrba,rxrb,LOC107729870,LOC107566635,LOC107751683 coding downstream 324066 774474 ~ 785585 (-)
AMCG00006265 NA coding upstream 37029 1156727 ~ 1160200 (-)
AMCG00006268 rnf5,LOC107694772 coding upstream 43602 1163300 ~ 1170846 (-)
AMCG00006267 NA coding upstream 51983 1171681 ~ 1179064 (-)
AMCG00006271 NA coding upstream 62012 1181710 ~ 1191081 (-)
AMCG00006272 NA coding upstream 73572 1193270 ~ 1199994 (-)
G108689 NA non-coding downstream 8359 1040218 ~ 1101292 (-)
G108664 NA non-coding downstream 150973 953292 ~ 958678 (-)
G108655 NA non-coding downstream 175826 933515 ~ 933825 (-)
G108491 NA non-coding downstream 200623 907890 ~ 909028 (-)
G108484 NA non-coding downstream 219849 889073 ~ 889802 (-)
G108717 NA non-coding upstream 60884 1180582 ~ 1201681 (-)
G108682 NA non-coding upstream 172340 1292038 ~ 1306880 (-)
G108750 NA non-coding upstream 201000 1320698 ~ 1321213 (-)
G108752 NA non-coding upstream 209104 1328802 ~ 1332044 (-)
G108756 NA non-coding upstream 230387 1350085 ~ 1397331 (-)
AMCG00006247 NA other downstream 235157 838855 ~ 874494 (-)
AMCG00006245 LOC106569953,LOC106588396,LOC107101422,LOC107103722 other downstream 360915 726064 ~ 748736 (-)
AMCG00006243 NA other downstream 407711 700535 ~ 701940 (-)
AMCG00006241 NA other downstream 547236 479582 ~ 562415 (-)
AMCG00006232 LOC107694105,LOC107737194,LOC107751684,LOC107575376 other downstream 711752 393832 ~ 397899 (-)
G108708 NA other upstream 6864 1126562 ~ 1134690 (-)
AMCG00006266 NA other upstream 15203 1134901 ~ 1137952 (-)
AMCG00006274 zbtb12,LOC106570057,LOC106588515 other upstream 91588 1211286 ~ 1216184 (-)
AMCG00006277 prrt1,LOC108272790,LOC107694357 other upstream 217489 1337187 ~ 1341665 (-)
AMCG00006292 NA other upstream 224818 1344516 ~ 1637731 (-)

Expression


Co-expression Network