G108708


Basic Information

Item Value
gene id G108708
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1126562 ~ 1134690 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU136000
GTAGCAGCAGTACAATTCAAAATGACAGGGAATCGCCACATAAAAACGAAAGTAAAAGTACTACAGAAATTAACTCTTACAATTACTATTACAATTTACAAGCTTTAATGCTTGTCATGCAAACTATTGTTTAAACTCCGAAACTGTGTGATACATGTACTCTTCATGGACATCATCGGCTAGAAAaggttaCAATGGTTTATATAACCAGGGAGCAACCTGTTACTTAAACACAGTGTTGCAGACATTCTTCATGGACCCGAAGGTCAGAGATACTATTTGCAGtttgccaGTTGAAAAGGAGgaaagcatttcatttcaactTAAGAAGTTGTTTAAAAATCTAGAGGAGGGACAAAACACTGCTGAAACAACAGGCATCACAACTAGCCTTGGTATAACTTGTGtcttcGAACAACAAGATGCAGAAGAATTTTTCCAGAGGATACTGAATGCAGTTGACAGTGATGTCTCTAAGCTCTACCGGGGCACCTTAATGAACACTACAAAGTGTTTGGGTTGTGAAGAATGCAACACAGACATGAGCAAGTTCCTGGATATTCCGCTTCCTGTAGATATCCTCCATGATTCCAATGAAATCTACAGTGTTGTAAGTACCAACCACTTATATTTATCCTCCAGTTTGAATTGTCTCATTGTCCAAAAGATCAAAGACTGTG

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
TU136000 True 680 TUCP 0.38 5 1126562 1134690

Neighbor

gene id symbol gene type direction distance location
AMCG00006258 psb7,LOC106569939,LOC106588382 coding downstream 53268 1068054 ~ 1073294 (-)
AMCG00006260 NA coding downstream 76834 1048178 ~ 1049728 (-)
AMCG00006259 NA coding downstream 79052 1042862 ~ 1047510 (-)
AMCG00006255 NA coding downstream 225717 896978 ~ 900845 (-)
AMCG00006248 rxrba,rxrb,LOC107729870,LOC107566635,LOC107751683 coding downstream 340977 774474 ~ 785585 (-)
AMCG00006265 NA coding upstream 22037 1156727 ~ 1160200 (-)
AMCG00006268 rnf5,LOC107694772 coding upstream 28610 1163300 ~ 1170846 (-)
AMCG00006267 NA coding upstream 36991 1171681 ~ 1179064 (-)
AMCG00006271 NA coding upstream 47020 1181710 ~ 1191081 (-)
AMCG00006272 NA coding upstream 58580 1193270 ~ 1199994 (-)
G108705 NA non-coding downstream 6864 1109651 ~ 1119698 (-)
G108689 NA non-coding downstream 25270 1040218 ~ 1101292 (-)
G108664 NA non-coding downstream 167884 953292 ~ 958678 (-)
G108655 NA non-coding downstream 192737 933515 ~ 933825 (-)
G108491 NA non-coding downstream 217534 907890 ~ 909028 (-)
G108717 NA non-coding upstream 45892 1180582 ~ 1201681 (-)
G108682 NA non-coding upstream 157348 1292038 ~ 1306880 (-)
G108750 NA non-coding upstream 186008 1320698 ~ 1321213 (-)
G108752 NA non-coding upstream 194112 1328802 ~ 1332044 (-)
G108756 NA non-coding upstream 215395 1350085 ~ 1397331 (-)
AMCG00006247 NA other downstream 252068 838855 ~ 874494 (-)
AMCG00006245 LOC106569953,LOC106588396,LOC107101422,LOC107103722 other downstream 377826 726064 ~ 748736 (-)
AMCG00006243 NA other downstream 424622 700535 ~ 701940 (-)
AMCG00006241 NA other downstream 564147 479582 ~ 562415 (-)
AMCG00006232 LOC107694105,LOC107737194,LOC107751684,LOC107575376 other downstream 728663 393832 ~ 397899 (-)
AMCG00006266 NA other upstream 211 1134901 ~ 1137952 (-)
AMCG00006274 zbtb12,LOC106570057,LOC106588515 other upstream 76596 1211286 ~ 1216184 (-)
AMCG00006277 prrt1,LOC108272790,LOC107694357 other upstream 202497 1337187 ~ 1341665 (-)
AMCG00006292 NA other upstream 209826 1344516 ~ 1637731 (-)
G108755 NA other upstream 215795 1350485 ~ 1554664 (-)

Expression


Co-expression Network