G108790


Basic Information

Item Value
gene id G108790
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1661753 ~ 1663033 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU136113
TCCAGGGTTTCAATGCGTGAATTTAATAGAGGGAGGGGAAACCGACAGACGAATCACTCCTTCAGCAGGAAggacggacagacggacagagacgggtcactttttaaaaaaaacaagtttattgCGACCGACTGGACAATCGCAGGggcaacaacacaaataaactcCCATTACTATAATCATCATAGCTATtagaataataatcatcataataataatgttgagagtaataataaaataaactgcagccCGAGAAGTCTCCCTCAGGATCCTAATTTCTGTTGCGAGCGAGAGAGCTGAACGCAGTGACGTTTGGTAGAGAGAGCCTGCAGGTATGTACAATCACAACCCAGctactgcaacacacacacaataaacagtCAGACATTAAcagccctggccctggagagacagtccagtccagcgggGTCTCGGCCCTGGTCATGGAGAGAGACGGTCCAGTATCTCGCTCTCATTTACTAGAGTgcactgaacaaaaacaaacagaaaccgTACAGTCAGCCGTCTTTATCCCAGGACAGCGGAAGCACTGCGTCTCcacaggaccagggctggagaccagGAAGTAAAATTCTGAATCAtctttatctatttttattataacaatCATTAGGACTATGGGGGACTGTCAATAAACCTTTGAAGAACCTTAAAGAACAATCCATATTCGTCTGAAACTGCAGAgataagagtgtgtgtgtgtgcgtgtgtgtgtgtgtgtggcctcCAATGTCAggcagtgggggtggggtgtggagagagagagagagagagagagaggggagagtaAGCTGTTTTGCATGGGAAATAAAAAGAGCgaaagagagggacagacagctCAATCTAAGACTCCGATGTCTGCGTGTCCGTCTGTTGCGCACGGTGTCCCAAGTGTGCCGTCACGGGTGCGAAGGTCAAAAACCACTGGAGCGTGTTTCAGCCCCCCGGCACGGCACGACACGGCATACTGAGGTTGTACTGTCCCACACTGCCTCCATCGCGTCGCCACGAGGAACTGTGGGGTgttgctgtactgcactgtgacGGGCTGGGTTTGGGTGTGTTGTGTTGAACTGTGCAGAGAGtttgggctgggctgggctgggcagctctcctctcctctcctctcctctcctctcctctcctcctctagCGTATGGCTTTGACTGGGCTCTTGAAGCTGCTGGctgcctggagctggagctggtagGCCATGGGGTGGATCTTAAACCCAtacagc

Function

NR:

description
PREDICTED: uncharacterized protein LOC103376870

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU136113 True 1261 lncRNA 0.50 2 1661753 1663033

Neighbor

gene id symbol gene type direction distance location
AMCG00006291 NA coding downstream 62296 1595672 ~ 1599457 (-)
AMCG00006283 NA coding downstream 106199 1550443 ~ 1555554 (-)
AMCG00006285 NA coding downstream 163699 1494360 ~ 1498054 (-)
AMCG00006278 nelfe coding downstream 361110 1298837 ~ 1300643 (-)
AMCG00006280 NA coding downstream 363783 1293396 ~ 1297970 (-)
AMCG00006290 NA coding upstream 15229 1678262 ~ 1683356 (-)
AMCG00006299 NA coding upstream 30210 1693243 ~ 1709505 (-)
AMCG00006304 rps5,LOC106570065 coding upstream 145623 1808656 ~ 1818368 (-)
AMCG00006305 NA coding upstream 203526 1866559 ~ 1870731 (-)
AMCG00006307 NA coding upstream 267601 1930634 ~ 1932402 (-)
G108770 NA non-coding downstream 101363 1504198 ~ 1560390 (-)
G108772 NA non-coding downstream 119392 1536944 ~ 1542361 (-)
G108760 NA non-coding downstream 252006 1405393 ~ 1409747 (-)
G108756 NA non-coding downstream 264422 1350085 ~ 1397331 (-)
G108752 NA non-coding downstream 329709 1328802 ~ 1332044 (-)
G108791 NA non-coding upstream 1915 1664948 ~ 1670631 (-)
G108789 NA non-coding upstream 56596 1719629 ~ 1721131 (-)
G108805 NA non-coding upstream 71162 1734195 ~ 1783566 (-)
G108834 NA non-coding upstream 222932 1885965 ~ 1886276 (-)
G108948 NA non-coding upstream 389958 2052991 ~ 2057622 (-)
G108784 NA other downstream 1749 1646480 ~ 1660004 (-)
AMCG00006292 NA other downstream 24022 1344516 ~ 1637731 (-)
G108755 NA other downstream 107089 1350485 ~ 1554664 (-)
AMCG00006279 NA other downstream 151213 1358397 ~ 1510540 (-)
AMCG00006284 prrc2a other downstream 167783 1473478 ~ 1493970 (-)
AMCG00006298 NA other upstream 59528 1722561 ~ 1724848 (-)
G108829 NA other upstream 218249 1881282 ~ 1881837 (-)
AMCG00006313 NA other upstream 356968 2020001 ~ 2024143 (-)
G108938 NA other upstream 434785 2097818 ~ 2130255 (-)
AMCG00006328 NA other upstream 661098 2324131 ~ 2329991 (-)

Expression


Co-expression Network