G108791



Basic Information


Item Value
gene id G108791
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1664948 ~ 1670631 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>TU136114
NNNNNTTTTGCAGGTTTCTTCTTTATGACCACATcagctcaaacaaacaaaaagcaaacaacaaccCAAAATTAATTAGTATAAGGAAGTGCAGTTTCAGCTTCAGTTAAGCTTATATAAAAGGCCACCTGGAGGCCTGGCGCTGCACTGCGCCCCCCTGCTGCACCGCACCGAGACTCAGTAATACCTCACTGCATCATTCCTCCCTGTGCCTGCCCTGTAGTCAATGCCACTCTCTTGCACATTAAGCACCACGCAGcagtaacacacaaacacacactcatttcAAGACATGCACAGTGCGTAATAAACACATCTGCACTATAACACACGCACTGTAATACATGCATTAGAATACACACATTGTAACACACTTAAGCACTACAATACTTTATAATGCACACgctatatattacacacatatatatatatatcagtcacCAATATGTACCCCCTGTGTGTCCTGTCAGGATACTTGTATTACCTgctcagcacacacacatatccacTGACCTGGGCGGTCGAACTGTGTAGCTCAGGGGACATCATAACCGAattccccctccacccccccccgaGCTGAAACTCTGCTGTTTCCCAGGCAAAGTTCAAAATCAGAAATATTGTGTTTACTTTCCCTGCTCTGTAGATTTGTGTTGATCTCAAACATTGTTCAATACTTTGAAATCAGGTtcttggtttaatttgtttgtagtttttttattattcttactcttttaatgaatgtaaaaaatgcctttattaaaattacaactTGATTAACAAATTCACTCTTGCAATGCATTTTTGGGAACAAAATCCTAGACTGTTTATTTGagtatatttatgaaaatagtTGGGATATTGAATACagaatagaaatatatatttctgttaaagGAAGTACCAGCCTTATACTGAATGGGCTAATGGGTCATTAGGATGTCTTGTACTTTAAAATTAGACAAATCTGGATGTCTTTGAAGAAACTGACTTCCAGACTAATacgtttaatttaattatcaaatcatgaataatacatattttacatgacaatgatcaatattaataacatgGTTTATTGATAATCATATGTTCTCCAATGGTATGAGGTTTCAGGACATTTGATGAGATATTGAGAAATTGGGcaatattttgagaaaatacTCTTACATTTccagattatttaaatatttaactctTATGGCACCTGCTCATCACTCCTACAGATCAATACTAATATCctatgttaaaaatacacatatataccaAGTGCaccaaaaacaatcaattaaaatgcatattagcAATACATTATTGCTTTTCACTTTATTGAGTCTCTAATAAACCAAACAGAATGTCTCCTTAACAATGTTTACAAGTAAGATTCggttaggttttgttttggtgtgaatgtgaatttaaaaatccTCTTCTGATTACATCAAAAACAATGATATGTTCGGCACAGAATTTGATTTGGGAAGAACCAGTATTCCCTATTCATTCATGCAGATCAGTAAAATGACTAATTCAACATCTGATCAGAGCAATAGcaataaagattaataaaatcacaatagttaaaatgtataaaacccaTCACGCTTAAAAGAGTCTGAACCACCTCACATCCGAGGGTTATAGAGAGGACCCACATTTGCGGACGCTACAGAATACAtgtattgagagagagatggatactTAGACGTACAGTTAGATCATTATAGAGTCGTAGATTTAGAGATATATATTGTGGTAGAGTCCGCCCAGCACTGTAGAAACCATTCTgttcttaataaaaaataaattacaccaaTTGTCCAGCTGCATAACCATGTCCCTGCAACACAATCAGATGTCTTCTCTACAGAAGCACATGCATCTCTGCACTTTTATCCGTCACAGCTTCACTTTCCCGGGCGCACACGCGTAGCGCTGTGACACACAACATGCAGGACCGCTAACCCaccacacacatatgcataggACATACATGCAAGTGTTGACTATATCTAGACCATACGAAATGTAGACTAtggttaattgcatttatttgacGTCGCTACTTTGTATGACATACGACAATCATCACGTACACATGACTGCATACTATAAATTCAGCATCCAGTCTTGAGTCTCTATATTGATCACAGAGCTAAACTATTATATAATGTTACGTATTCCTTGCTGACTAAGCAAGATTTATGACGCATATTTGTGGCCATGTACACATCGACACATTATTTCCACATAACCTTTACTGAGCTCCAGATCACAGATGCCGATGGGTTCCTGTGCACATCGCACCGCTGCCTTTCGATCACTCGATAAGTCGCAATACCGGATACTGACCAGCAGGTGTCACTGTGGAGAGAGGATCGAGTGCTTCGAAGCAGTGAACCTTTTATCCATAAAATAGCTTCAAATGTTTCAATGCTATAAGCAgattcgaagatggatggatggatgtttcaATGCTTCGGAAAGCTTTGTTTCACCCACCACTAGAGAAATAATCAATCACCTGAATAAGGCTAATggctgataaataaataaattagctgACAGAACATCCAATCAGAGAAAGAAGGAAATGCGGCCATATTCTCATGCTGCTCTCCTGCAACCCTTCAGTTGATCACAGCTGATTAACCAAGAGCCACGGGGCCCTATTTGGACCAGCCTGAATCAGAAATGCTTAGAGGGGCAGACAAATCGTCCAGAATACCAAAGATTTGATCCACAACCATAATGTATGTTCTTGGCatgtttgtctttctgttttaGACCTTTAGCACTTTACAATTGCTGTCTTTAATGCTGCATAAatgttcattaatttaaaatgtgggcAATTAATTTGTATCACAGGTTACCTTTTGGTAGCCTATTTGACTACCACACATATTAATATGTCCACCCCTGACTTGGATAGAAAaagtttaatatgaaaaataaaaaataaaaatagtgaGAAGCTTGTGTgtactgattttatttactAACGATACAATATGTGAgcatgtttctgttttgatttataaaactAGTTCTGTGCCTTTTCTGACaggtttattttatgaaaaagacCACTCCACTGTTAAATCCTGTGCAGGCTCCTAGGATATGACATAGGATCTGGTGCAGGATCTTTCAATTTACCTTGTAGGATCCAGCTCAGGATCTTGTACAATATCCTGTCACAGGAACTTATAAGACCCTACAGGATCTTAAACAGGATCCTGTCCAAGATTTCTACCAGGGTATCTATCAGTTGTCTATCTGACATGACTCAATCCTGGTATTTCAACAGAAAGTTCAGATACACCATAATACCTCAGGTAGATTGACTGACCAATTTATTTAGTATTGAAAACATGGACCGGAATCAGCTTTGCTAACAGACCTGCCTGCTTGAGTAACTGTAATTTTGACAGCAGCACCCCTGGATGTATGACAGTGTAAATAATCCATTGCcacctcacctcacctcacACCGCTCACAAGCTATTTGATTCCCAGGACAAACAACCAGGGaaatcagcaaaaaaaaaaaaaaaaagttgcaaacAGTAAACAGAAGACCCTACACAACCCCCGAGGGGACATATGGAGGAAAAATAAAGCTAAAGTAAAGTGTTCCCTTGCAAAATAATGACTTGTTGGATgcatttactgtttgtttttttgtgctgtaGATTATTTTGTGcccaataaaaatgaattatatattttgtaattttggag

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU136114 True 3750 lncRNA 0.37 2 1664948 1670631

Neighbor


gene id symbol gene type direction distance location
AMCG00006291 NA coding downstream 65491 1595672 ~ 1599457 (-)
AMCG00006283 NA coding downstream 109394 1550443 ~ 1555554 (-)
AMCG00006285 NA coding downstream 166894 1494360 ~ 1498054 (-)
AMCG00006278 nelfe coding downstream 364305 1298837 ~ 1300643 (-)
AMCG00006280 NA coding downstream 366978 1293396 ~ 1297970 (-)
AMCG00006290 NA coding upstream 7631 1678262 ~ 1683356 (-)
AMCG00006299 NA coding upstream 22612 1693243 ~ 1709505 (-)
AMCG00006304 rps5,LOC106570065 coding upstream 138025 1808656 ~ 1818368 (-)
AMCG00006305 NA coding upstream 195928 1866559 ~ 1870731 (-)
AMCG00006307 NA coding upstream 260003 1930634 ~ 1932402 (-)
G108790 NA non-coding downstream 1915 1661753 ~ 1663033 (-)
G108770 NA non-coding downstream 104558 1504198 ~ 1560390 (-)
G108772 NA non-coding downstream 122587 1536944 ~ 1542361 (-)
G108760 NA non-coding downstream 255201 1405393 ~ 1409747 (-)
G108756 NA non-coding downstream 267617 1350085 ~ 1397331 (-)
G108789 NA non-coding upstream 48998 1719629 ~ 1721131 (-)
G108805 NA non-coding upstream 63564 1734195 ~ 1783566 (-)
G108834 NA non-coding upstream 215334 1885965 ~ 1886276 (-)
G108948 NA non-coding upstream 382360 2052991 ~ 2057622 (-)
G109090 NA non-coding upstream 675891 2346522 ~ 2390552 (-)
G108784 NA other downstream 4944 1646480 ~ 1660004 (-)
AMCG00006292 NA other downstream 27217 1344516 ~ 1637731 (-)
AMCG00006298 NA other upstream 51930 1722561 ~ 1724848 (-)
G108829 NA other upstream 210651 1881282 ~ 1881837 (-)
AMCG00006313 NA other upstream 349370 2020001 ~ 2024143 (-)
G108938 NA other upstream 427187 2097818 ~ 2130255 (-)
AMCG00006328 NA other upstream 653500 2324131 ~ 2329991 (-)

Expression



Co-expression Network