G108832


Basic Information

Item Value
gene id G108832
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1891036 ~ 1892425 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU136168
TAGTGTTCATTTTGggtcttttcatacatttcaacatatggagaaaaataaatacaacgaCGAACGTGATCGTTATAAGGGGTCTCCACGTTACTAAAAAAGTCGAAACATAGATTAGTCTTAATTTGATAGCTAGACTAATCTCATGCAAGTTAGTAAAAAGTTAACTTGGTTTTGGACAAAACCAAGATCCAGGCATCAATTGACAAGTTTGTGAATTGACTTTTCCAGGCGGACAAGAGCCGACATACAATACAGACATACGGCCGGCATTGATAGTctagtttatttattgtgaaaccACCGGCAAGCTGTGTCTTAGCCTATTTGCACAACCGACGTATTTTGAAAGTATATCAAATTCAGGTAATAGCGAAGCTGTCAgtttcattactttatattcatataataaatatataaatggtaattaaatggtaatctgcatgagaaataaaaaaatgaataagaaatcGGTTATAACGATCATCCGCTTAGTCATCAATTTGACCCGGACGGACGTGTAAAGCAATTGGTCGGGAACCTGTCACCCTTGGGACTTGCAcgttttgttgatttattattaattgtttttcattatttcgtTTTGAGCACTTTATTTTGGTTGGACTACTTATTTACttcactattattttctttttaatttgattgtacGTATTCACGTTTTTAAAACCACTCGCTCTcgcttttattgtattttctatttttatgttgaGCGCTCTTTTATAATTTCTTTTGTTTCTCACGCCGCAGCTCAGCCAAGGGCCCAGTGAGACGGACGGTAATAGAGATTTGGGGCCCCTGTGTTGCTTGCTGTTAAACCTTTTGTGCTTTTATATTTCTCTGGATCTTCACACGAGAGCAGCAGAGCCTCCAGGGGGAGCAGAGCAGCAAGGGGCCGGGAGGCGCAGGCGGGACACTGGAGATCAGGGCCCCTGTCCGAGGACCAGCCACGGGACTGGAGGCTGCTGCTCCGCCGGCTGTGCTGTTGCAATTATGTAGGAGCTCCTGTTACTCGACtggctgtttcttttctctctgttgtccttctgtttttttattattttttgaggTATTGCGTTTGAAGGCGGGATTTCTATCAAGAGGCTCGCCTGCCGCTCCAGTGGAGGACTCGAGTGGGAGCTCTGGTGGACGAGTTCAGtatttcatttgttgttttaaattctttttAACCTTTGTATGAAACGTGGgaagtaattgtattaaattattgaaaccCATCCCTTTGTACTGTTCTGCTGCAACTGGTGTGTGGACCGCTGGATAAAAAAATCTTGGAAGAGGTATTTTTGTAGTTGGTTGTGGCTGCTCGGGGTGTTGCAGCCCTAAGACTCCTGATACTCAACAGCCG

Function

GO:

id name namespace
GO:0004953 icosanoid receptor activity molecular_function
GO:0004954 prostanoid receptor activity molecular_function
GO:0004955 prostaglandin receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU136168 True 1390 lncRNA 0.41 1 1891036 1892425

Neighbor

gene id symbol gene type direction distance location
AMCG00006303 NA coding upstream 3466 1883754 ~ 1887570 (+)
AMCG00006301 NA coding upstream 10956 1877557 ~ 1880080 (+)
AMCG00006306 NA coding upstream 25730 1860979 ~ 1865306 (+)
AMCG00006300 NA coding upstream 84996 1805301 ~ 1806040 (+)
AMCG00006302 NA coding upstream 97121 1764374 ~ 1793915 (+)
AMCG00006308 NA coding downstream 4080 1896505 ~ 1908086 (+)
AMCG00006309 NA coding downstream 149591 2042016 ~ 2045884 (+)
AMCG00006311 NA coding downstream 167774 2060199 ~ 2068535 (+)
AMCG00006312 ppt2,LOC107086175,LOC101072178 coding downstream 176325 2068750 ~ 2073323 (+)
AMCG00006310 NA coding downstream 188107 2080532 ~ 2089002 (+)
G108831 NA non-coding upstream 1001 1889527 ~ 1890035 (+)
G108632 NA non-coding upstream 239577 1651055 ~ 1651459 (+)
G108587 NA non-coding upstream 336371 1352818 ~ 1554665 (+)
G108833 NA non-coding downstream 438 1892863 ~ 1893487 (+)
G108847 NA non-coding downstream 59789 1952214 ~ 1953042 (+)
G108854 NA non-coding downstream 99190 1991615 ~ 2011808 (+)
G108856 NA non-coding downstream 115662 2008087 ~ 2033572 (+)
G108878 NA non-coding downstream 205924 2098349 ~ 2128000 (+)
G108626 rps5,LOC107086176 other upstream 76426 1637397 ~ 1814610 (+)
AMCG00006294 NA other upstream 149700 1735932 ~ 1741336 (+)
G108585 NA other upstream 461049 1350383 ~ 1429987 (+)
AMCG00006275 NA other upstream 575478 1286829 ~ 1315558 (+)
AMCG00006276 NA other upstream 604984 1278460 ~ 1286052 (+)
AMCG00006366 NA other downstream 1350512 3242937 ~ 3252080 (+)
AMCG00006368 NA other downstream 1382357 3274782 ~ 3286179 (+)
G109309 NA other downstream 1468929 3361354 ~ 3365565 (+)
G109362 NA other downstream 1610756 3503181 ~ 3506679 (+)
AMCG00006379 NA other downstream 1677614 3570039 ~ 3621796 (+)

Expression


Co-expression Network