G108833


Basic Information

Item Value
gene id G108833
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1892863 ~ 1893487 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU136169
AAGATGAAAAGCTTCAACTATCTCCATTTCTTCTGAACCTGTTTATCCTGTCCAATCATCCCATCGTGGTCCTTGCATAATGCAATAACCATTGTGAACATAAGCTGCACTTGTATCAAGTCCCACACTAACTAATCGAGCAACGCAGTGGTCTTAACGATGTACTCACTGAGGTAAAGTTAGtctactttttactttgaataaactcCTAAAGCATGATGGTAATAAACGAGATGTAATACTTGGTTCAGCGATGGAccagaacacacacattatattaaGTACCAATATACACGAGGTGAATTCAAACAAGTGCTACCCGAGCACAGATACAGGACATATGGGATTTGGATTTGAGGCTTGAAGTTACTGCcaatgatcaaactgtcaatattaaaagaaaaaacaacgaCAGTAACGGTAAGAAACCCGCACCGAGAGCACAGACGAACGAGTCAGAAAATGACGAGATGGGGTAAATGCATGACTGACGTCACAGATGCGGGAgataattgtgttatttctatgtaaagGGAATTAGttagattgtttcttttaacggcacaaaccggcacaaatcgaGCCAAACGAATGGCACCGATTAGGAGCGATTTGAGCGAGANNN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU136169 True 625 lncRNA 0.40 1 1892863 1893487

Neighbor

gene id symbol gene type direction distance location
AMCG00006303 NA coding upstream 5293 1883754 ~ 1887570 (+)
AMCG00006301 NA coding upstream 12783 1877557 ~ 1880080 (+)
AMCG00006306 NA coding upstream 27557 1860979 ~ 1865306 (+)
AMCG00006300 NA coding upstream 86823 1805301 ~ 1806040 (+)
AMCG00006302 NA coding upstream 98948 1764374 ~ 1793915 (+)
AMCG00006308 NA coding downstream 3018 1896505 ~ 1908086 (+)
AMCG00006309 NA coding downstream 148529 2042016 ~ 2045884 (+)
AMCG00006311 NA coding downstream 166712 2060199 ~ 2068535 (+)
AMCG00006312 ppt2,LOC107086175,LOC101072178 coding downstream 175263 2068750 ~ 2073323 (+)
AMCG00006310 NA coding downstream 187045 2080532 ~ 2089002 (+)
G108832 NA non-coding upstream 438 1891036 ~ 1892425 (+)
G108831 NA non-coding upstream 2828 1889527 ~ 1890035 (+)
G108632 NA non-coding upstream 241404 1651055 ~ 1651459 (+)
G108605 NA non-coding upstream 397155 1494364 ~ 1495708 (+)
G108602 NA non-coding upstream 404993 1487312 ~ 1487870 (+)
G108847 NA non-coding downstream 58727 1952214 ~ 1953042 (+)
G108854 NA non-coding downstream 98128 1991615 ~ 2011808 (+)
G108856 NA non-coding downstream 114600 2008087 ~ 2033572 (+)
G108878 NA non-coding downstream 204862 2098349 ~ 2128000 (+)
G108884 NA non-coding downstream 234831 2128318 ~ 2130263 (+)
G108626 rps5,LOC107086176 other upstream 78253 1637397 ~ 1814610 (+)
AMCG00006294 NA other upstream 151527 1735932 ~ 1741336 (+)
G108585 NA other upstream 462876 1350383 ~ 1429987 (+)
AMCG00006275 NA other upstream 577305 1286829 ~ 1315558 (+)
AMCG00006276 NA other upstream 606811 1278460 ~ 1286052 (+)
AMCG00006366 NA other downstream 1349450 3242937 ~ 3252080 (+)
AMCG00006368 NA other downstream 1381295 3274782 ~ 3286179 (+)
G109309 NA other downstream 1467867 3361354 ~ 3365565 (+)
G109362 NA other downstream 1609694 3503181 ~ 3506679 (+)
AMCG00006379 NA other downstream 1676552 3570039 ~ 3621796 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G213201 NA non-coding CI01000050 null 119647 ~ 130806 (-)