G108856


Basic Information

Item Value
gene id G108856
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2008087 ~ 2033572 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU136194
AACGCTACACAATGAAGTTGgttttacacaaacatttaagtgtagcatactgtacatacaacTTGGTGTTGTTGGTAATTTGTGAAAAGCTGATGGAAATAGTTGCCTCAAGTAGAGCAGGCacaatattttttacagtgcaGGTTTTACACAAACCCCAGAGAACTTGTCACCACCTATGGgtgctaaattaaaaacacctaAATTACACCCACTAATATTTCCCCCCGGGCAAGCTCAAGGACCCGAAGGCACCACAAGATGGATGGTAAGGTAAGAATAAACCGTTTATTACACAGTTTACACTGTTACAGGGCACAAAGTCTGATCAGTTAATAGCACACACAGGATATCACAATGACTTACAGGACACAATATAGTtaatactaaaattaaaatgcctttaaatcACCCAGGGTgcctaaaataaaaccaataaaaagtataatgaaagctaataaaagtaataatataaatatacaataactaGCTCAATCTCACTATATAGGCAAGTCAAAAATCAATAGAGGGAAGTCCTGTACCAGGAAATTGGTAGAGAGATGTCCTGTGCAAAATGCTTTTTCAAACCTTTTGCGGGTCGCTTAGTGCTGAATCCTCTGGTCCCGTCCGGTCTTCGTTTAGCAATGTGTAAACCACAGTAAGGAAATCTTTTGAAGTTGGATCTCTGCCGTCACCCTCTGCCTTTCCCTCCTGCCCTGGTCATTGCAGGTTATTTTTGCAGCTGTTCTCCTCCCGACTGCTCTGCTCGCTTGCTGTATATCTTTCAGTGTACACCCTGAGAGTGGAGACTCCTAGGCTTTTATAGACGGTTTGCTGGATTAGCAGGCGTCGGTGAAGATGATTCATTGGGAGAACACTGGGGAATCTATGTGGGAATGTCGACCAGCGGCATGCGCCTGGCCATTAACTAATAATCCCATCACCcaattaataaagtaattaaataaaaatatacaataaaaccaccacattgtaaacaatttcaaataatgaaagcaaaagAAGTGATCATATAAAATAAGTGCAACAGCAATATAAGGGAAAGAAAAGATTAGTGATTATCAGCATCACGCACCACTGTGACACACAACGCAATGGCAACCGCTCCTGCTTCCCTCCAATTAGCTTATAGGCCTGCCATTCCAAAAAAGGTTACAATATAGCCGggttaacaaaagaaaatacaaacgAAAACAATACAGACAGTAACATCTTGTCTCCTTATTTCATGACCAACACCAACATGGACACAGCAGCCCTCAGCAAATACAAGGAGAGACATACAATACGGGCACAGCCCAGCTTAATATACAGGACCTTAACactcaggaaaacaaaagaaacaacttCACACTGTGCTATGGCTTTTCAGTGCTCAGggctttccccctctctctctctcacagctcctctccctcctgtTGGGTGAAGCCGCATGAGTAGACAGGCTGCACCTGTGGAAGATCAGCTAATTACACCCCCCAGGTGCACTGTGAGAGCCAACGTCACGGATTCCTGTTGCtcaaattattttgtcttttcctcCCCacaattatacaatgtaatcCTATCCAAAGTAATCCAAAATACACAGTGGTGTGTAATggccaaaaaacaaagaactgaaaatgaaaaaggattGTGCTCAAATGGAAAAAACTCCTCAGACACACCATCCTCTGTGATTAAAAAGATAAGTTGCTTTGTGTCGATGCTAACTCTGTCCTTGTCCATCTCCTCTGCTTCCCTGGCAGCTCCAGGGTGTCTCAGTCTGGGCCCCTGTACtctactatagtccacacagcactggctccagttTGGACCCTATACTACAGTGTACTGTCCTCCACACAGCGCTGGCCCTGTAATTCGTATTCCTGCGTTTTAACTTCCCTCTTTTTATACAACACACCAAGCACAGCAGCCAAGGGTAAGAgcaagagcaaaataaaataatagttctTTGTCCTTGTGGCTCCAGCATCtgtgaaatagaaaaaatgttttaagagaatgtttactaaaatatatatttttctgactGATCTGTgataacacactgactgactgacacactgactgagtgactgactgactgacacactgacacactgactgactgactgactgactgatacctTGCCGTACAGTTCCATTGCGAAGGCGGAGGTGGTGCTGTTGACATCGATGGCGCCGGTGTCTCGCAGGCGGGTCAGGAAGTCCTGTGGGCTGGTGCTACGCCGGGCCGTGCCAATCAGGAACTGGACCACGCAGCGGTCACTCAGCCCCAGGACAGAGTGCAGCTTGTCACTCACCCACTGCTCCAGATTGGCCAttctgggggagagagagagtgaagaggGGAGGTAGCGAGGGAAAGGGGCGATagagaagagaggaagagagagggggtgggtgtcag

Function

NR:

description
PREDICTED: potassium voltage-gated channel subfamily E member 4-like

GO: NA

KEGG:

id description
ko04660 T cell receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU136194 True 2443 lncRNA 0.44 2 2008087 2033572

Neighbor

gene id symbol gene type direction distance location
AMCG00006308 NA coding upstream 100001 1896505 ~ 1908086 (+)
AMCG00006303 NA coding upstream 120517 1883754 ~ 1887570 (+)
AMCG00006301 NA coding upstream 128007 1877557 ~ 1880080 (+)
AMCG00006306 NA coding upstream 142781 1860979 ~ 1865306 (+)
AMCG00006300 NA coding upstream 202047 1805301 ~ 1806040 (+)
AMCG00006309 NA coding downstream 8444 2042016 ~ 2045884 (+)
AMCG00006311 NA coding downstream 26627 2060199 ~ 2068535 (+)
AMCG00006312 ppt2,LOC107086175,LOC101072178 coding downstream 35178 2068750 ~ 2073323 (+)
AMCG00006310 NA coding downstream 46960 2080532 ~ 2089002 (+)
AMCG00006317 NA coding downstream 100784 2134356 ~ 2137701 (+)
G108847 NA non-coding upstream 55045 1952214 ~ 1953042 (+)
G108833 NA non-coding upstream 114600 1892863 ~ 1893487 (+)
G108832 NA non-coding upstream 115662 1891036 ~ 1892425 (+)
G108831 NA non-coding upstream 118052 1889527 ~ 1890035 (+)
G108632 NA non-coding upstream 356628 1651055 ~ 1651459 (+)
G108878 NA non-coding downstream 64777 2098349 ~ 2128000 (+)
G108884 NA non-coding downstream 94746 2128318 ~ 2130263 (+)
G108890 NA non-coding downstream 126405 2159977 ~ 2252346 (+)
G108889 NA non-coding downstream 216995 2250567 ~ 2289455 (+)
G108914 NA non-coding downstream 226370 2259942 ~ 2262497 (+)
G108626 rps5,LOC107086176 other upstream 193477 1637397 ~ 1814610 (+)
AMCG00006294 NA other upstream 266751 1735932 ~ 1741336 (+)
G108585 NA other upstream 578100 1350383 ~ 1429987 (+)
AMCG00006275 NA other upstream 692529 1286829 ~ 1315558 (+)
AMCG00006276 NA other upstream 722035 1278460 ~ 1286052 (+)
AMCG00006366 NA other downstream 1209365 3242937 ~ 3252080 (+)
AMCG00006368 NA other downstream 1241210 3274782 ~ 3286179 (+)
G109309 NA other downstream 1327782 3361354 ~ 3365565 (+)
G109362 NA other downstream 1469609 3503181 ~ 3506679 (+)
AMCG00006379 NA other downstream 1536467 3570039 ~ 3621796 (+)

Expression


Co-expression Network