G108938


Basic Information

Item Value
gene id G108938
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2097818 ~ 2130255 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU136288
TGAGCCCTGTGGGGGGGCTGTGGTTTGGTAATTGTCCCAGAGGGGGACGGTAACGAGTGTGAGGGGCAGCAGCACTAATGgggtctctctctccacaggtcTCTCACAGCCAGGAACCTGcactggggggggggcaaaacTCCCCAGCTCTCCCAGTGGGGCTGTGCCGGTGACACAGTTTTAGTTTCAAACAAACACTAGAACTACAGAATTaccaaataaaagtaatattaacaaataaacacaacccAAATAAAATAAGGATTTAAAAGAATGAGGTGACTATTGCAAATTGTTTGTTCAAAGTGTTACAACGTTGCACTTTGCTTCCTGCAAGTGAAGCACTAGAGTGGACTGGAATGTCTTCAAACAGGTCCGCTCAACGGCCGTTGTTctggaaatgtgttgatgctACAGCTGTGAGCGTCCTGACAGACACCTAGTCCAATCTCACAACAAGTTTATTCATTTTGGCTGCAGTTTTTtaagcacaatttaaaaaaaatatatatataatattttaaattgccaGTGTCAAAAAGTCAGCACGGTGAGGTGGAATACCGTTTCCCGGCCCAGCCCAGAAACCCCGCCCccattgccccccccccacccccgaccaTGAATTTCCAAGCCTGGTGAAGGAGGAAGGAGGTGACAGGAGACAGTCCCAGGTATTTGTCTTTGTTACTCCCCTCCCCCAGCGTTAGTCAACATCAGGACAAGACAGTCCTgtcacagtcacacagacagacagtcagagaCATACAGTCAGTccagtcacacagacagacatacagtcAGTCCAGTCAGACATACAGTCAGTccagtcacacagacagacagacagacagacagtccagtcacacagacagacaaactgaCAGTCAGACAGTCCAGCCACAGAGATGCGGTCAGACAACAGACAGTCCAGTANNNNNNNNNNccagtcacacagacagacagacaacagaCAGTCCAGTATATAGGTTATCAGGAAATTGTGCTCTTCAATTATCAATATCTGGCCAAAAAAACCTGTATCAGTTGGGCTCTAGTGTTTACTTAGTGATCCAACCAGGTCCTCAACGGTGGAGCAGGCAGAAGATGGCAGGAAGTCACAATGACTGTGGAGGCCGAGGAAAGCTGCAGCAGGAAAGGACACACAGTCGTCAGTTAGAATCCCATTGACGAGCTGGACGTGTCGGTGCAGAGGCCATGAGGAGAGCGCCTCTCTCTCATGTGGGCAGCCCCTGAGCCTCCGTCTGTATAGCAGGGCAGCTGTGACTGTGTGGTTTAACCCTGCGGGCGCCGGTGCCTCTTTTCCAGTGTGTGCTGTAGAGGGCGGCACCGTGACCCCTGACCCTGCCTATGGGCCCCGAGTCTCAGGGCAGGAGCAGGAGGTCACACTGTCTGCACTGACCTTCACTGACCAGGGCTCCTACACAGTGCTGGACTCCCAGAGCAGAGCGACCATCAGCACTGTGAACGTCACTGTGACAGcTCACAGAGACTCCCTCACCCTGCGGTCTGGAGCCGCCCTCTCCCTCCGCCTGTTCACTGCTGAGCCAGTGGAggtgctgtttgctgcaggagagggagcctctgtctcagtgtgcgCTGTGGAGAGGGGCGCAGC
>TU136289
TGAGCCCTGTGGGGGGGCTGTGGTTTGGTAATTGTCCCAGAGGGGGACGGTAACGAGTGTGAGGGGCAGCAGCACTAATGgggtctctctctccacaggtcTCTCACAGCCAGGAACCTGcactggggggggggcaaaacTCCCCAGCTCTCCCAGTGGGGCTGTGCCGGTGACACAGTTTTAGTTTCAAACAAACACTAGAACTACAGAATTaccaaataaaagtaatattaacaaataaacacaacccAAATAAAATAAGGATTTAAAAGAATGAGGTGACTATTGCAAATTGTTTGTTCAAAGTGTTACAACGTTGCACTTTGCTTCCTGCAAGTGAAGCACTAGAGTGGACTGGAATGTCTTCAAACAGGTCCGCTCAACGGCCGTTGTTctggaaatgtgttgatgctACAGCTGTGAGCGTCCTGACAGACACCTAGTCCAATCTCACAACAAGTTTATTCATTTTGGCTGCAGTTTTTtaagcacaatttaaaaaaaatatatatataatattttaaattgccaGTGTCAAAAAGTCAGCACGGTGAGGTGGAATACCGTTTCCCGGCCCAGCCCAGAAACCCCGCCCccattgccccccccccacccccgaccaTGAATTTCCAAGCCTGGTGAAGGAGGAAGGAGGTGACAGGAGACAGTCCCAGGTCCTCAACGGTGGAGCAGGCAGAAGATGGCAGGAAGTCACAATGACTGTGGAGGCCGAGGAAAGCTGCAGCAGGAAAGGACACACAGTCGTCAGTTAGAATCCCATTGACGAGCTGGACGTGTCGGTGCAGAGGCCATGAGGAGAGCGCCTCTCTCTCATGTGGGCAGCCCCTGAGCCTCCGTCTGTATAGCAGGGCAGCTGTGACTGTGTGGTTTAACCCTGCGGGCGCCGGTGCCTCTTTTCCAGTGTGTGCTGTAGAGGGCGGCACCGTGACCCCTGACCCTGCCTATGGGCCCCGAGTCTCAGGGCAGGAGCAGGAGGTCACACTGTCTGCACTGACCTTCACTGACCAGGGCTCCTACACAGTGCTGGACTCCCAGAGCAGAGCGACCATCAGCACTGTGAACGTCACTGTGACAGcTCACAGAGACTCCCTCACCCTGCGGTCTGGAGCCGCCCTCTCCCTCCGCCTGTTCACTGCTGAGCCAGTGGAggtgctgtttgctgctgcaggagagggagcctctgtctcagtgtgcgCTGTGGAGAGGGGCGCAGCGAGCCGCCCTGGCCCCGGGTACGAGCACAGAGTGTCAGTGCAGAGCGGCTCTCTGACCCTGCGCTCACTCACAGCAGCTGACCAGGGAAACTACACAGTGAGGGACTGCAGCACCGACCACACCGTCAGCAgcatctctgtgtctgtgtctgtggcagACCCTCCTCTGGACAGAGCTGCTGTTGCTGTAGCTGTTGCTGTAGCTGTCCTCATCCTCCTGGCTCTGG
>TU136294
TGAGCCCTGTGGGGGGGCTGTGGTTTGGTAATTGTCCCAGAGGGGGACGGTAACGAGTGTGAGGGGCAGCAGCACTAATGgggtctctctctccacaggtcTCTCACAGCCAGGAACCTGcactggggggggggcaaaacTCCCCAGCTCTCCCAGTGGGGCTGTGCCGGTGACACAGTTTTAGTTTCAAACAAACACTAGAACTACAGAATTaccaaataaaagtaatattaacaaataaacacaacccAAATAAAATAAGGATTTAAAAGAATGAGGTGACTATTGCAAATTGTTTGTTCAAAGTGTTACAACGTTGCACTTTGCTTCCTGCAAGTGAAGCACTAGAGTGGACTGGAATGTCTTCAAACAGGTCCGCTCAACGGCCGTTGTTctggaaatgtgttgatgctACAGCTGTGAGCGTCCTGACAGACACCTAGTCCAATCTCACAACAAGTTTATTCATTTTGGCTGCAGTTTTTtaagcacaatttaaaaaaaatatatatataatattttaaattgccaGTGTCAAAAAGTCAGCACGGTGAGGTGGAATACCGTTTCCCGGCCCAGCCCAGAAACCCCGCCCccattgccccccccccacccccgaccaTGAATTTCCAAGCCTGGTGAAGGAGGAAGGAGGTGACAGGAGACAGTCCCAGGTATTTGTCTTTGTTACTCCCCTCCCCCAGCGTTAGTCAACATCAGGACAAGACAGTCCTgtcacagtcacacagacagacagtcagagaCATACAGTCAGTccagtcacacagacagacatacagtcAGTCCAGTCAGACATACAGTCAGTccagtcacacagacagacagacagacagacagtccagtcacacagacagacaaactgaCAGTCAGACAGTCCAGCCACAGAGATGCGGTCAGACAACAGACAGTCCAGTANNNNNNNNNNccagtcacacagacagacagacaacagaCAGTCCAGTATATAGGTTATCAGGAAATTGTGCTCTTCAATTATCAATATCTGGCCAAAAAAACCTGTATCAGTTGGGCTCTAGTGTTTACTTAGTGATCCAACCAGGTCCTCAACGGTGGAGCAGGCAGAAGATGGCAGGAAGTCACAATGACTGTGGAGGCCGAGGAAAGCTGCAGCAGGAAAGGACACACAGTCGTCAGTTAGAATCCCGTGAGtaataacagagagagaggaatggacTATTGAATTGAACTCCTCAGTATTAGCATTGCATGATTTACTCCTCTTCAGATGTTCTTCTTTCCCCCTTGTCCTTTTAAACGATGTCTGACTAGAGTTTTATGTTGATTAAGATTGACGAGCTGGACGTGTCGGTGCAGAGGTGAGACGCAGACTTATACActcacattcaaataaacacactgcCCTCAAAATCACACATTcgcacactctcactctcaaacactcactgacacactcttCAAATACTCTCCcactcacattcacacactcactcacatttccagtctctctctctctctcactctcaaacatttacacacacgcacacacacacacacacacacatccccacAGTGGTGCCCCAGTGTCCCGGCTCTGCCTCTGTCTGATCCCCAGTCCtcccctgtcctctctctgcaGGCCATGAGGAGAGCGCCTCTCTCTCATGTGGGCAGCCCCTGAGCCTCCGTCTGTATAGCAGGGCAGCTGTGACTGTGTGGTTTAACCCTGCGGGCGCCGGTGCCTCTTTTCCAGTGTGTGCTGTAGAGGGCGGCACCGTGACCCCTGACCCTGCCTATGGGCCCCGAGTCTCAGGGCAGGAGCAGGAGGTCACACTGTCTGCACTGACCTTCACTGACCAGGGCTCCTACACAGTGCTGGACTCCCAGAGCAGAGCGACCATCAGCACTGTGAACGTCACTGTGACAGcTCACAGAGACTCCCTCACCCTGCGGTCTGGAGCCGCCCTCTCCCTCCGCCTGTTCACTGCTGAGCCAGTGGAggtgctgtttgctgcaggagagggagcctctgtctcagtgtgcgCTGTGGAGAGGGGCGCAGC
>TU136304
TGAGCCCTGTGGGGGGGCTGTGGTTTGGTAATTGTCCCAGAGGGGGACGGTAACGAGTGTGAGGGGCAGCAGCACTAATGgggtctctctctccacaggtcTCTCACAGCCAGGAACCTGcactggggggggggcaaaacTCCCCAGCTCTCCCAGTGGGGCTGTGCCGGTGACACAGTTTTAGTTTCAAACAAACACTAGAACTACAGAATTaccaaataaaagtaatattaacaaataaacacaacccAAATAAAATAAGGATTTAAAAGAATGAGGTGACTATTGCAAATTGTTTGTTCAAAGTGTTACAACGTTGCACTTTGCTTCCTGCAAGTGAAGCACTAGAGTGGACTGGAATGTCTTCAAACAGGTCCGCTCAACGGCCGTTGTTctggaaatgtgttgatgctACAGCTGTGAGCGTCCTGACAGACACCTAGTCCAATCTCACAACAAGTTTATTCATTTTGGCTGCAGTTTTTtaagcacaatttaaaaaaaatatatatataatattttaaattgccaGTGTCAAAAAGTCAGCACGGTGAGGTGGAATACCGTTTCCCGGCCCAGCCCAGAAACCCCGCCCccattgccccccccccacccccgaccaTGAATTTCCAAGCCTGGTGAAGGAGGAAGGAGGTGACAGGAGACAGTCCCAGTGTTTACTTAGTGATCCAACCAGGTCCTCAACGGTGGAGCAGGCAGAAGATGGCAGGAAGTCACAATGACTGTGGAGGCCGAGGAAAGCTGCAGCAGGAAAGGACACACAGTCGTCAGTTAGAATCCCGCCATGAGGAGAGCGCCTCTCTCTCATGTGGGCAGCCCCTGAGCCTCCGTCTGTATAGCAGGGCAGCTGTGACTGTGTGGTTTAACCCTGCGGGCGCCGGTGCCTCTTTTCCAGTGTGTGCTGTAGAGGGCGGCACCGTGACCCCTGACCCTGCCTATGGGCCCCGAGTCTCAGGGCAGGAGCAGGAGGTCACACTGTCTGCACTGACCTTCACTGACCAGGGCTCCTACACAGTGCTGGACTCCCAGAGCAGAGCGACCATCAGCACTGTGAACGTCACTGTGACAGcTCACAGAGACTCCCTCACCCTGCGGTCTGGAGCCGCCCTCTCCCTCCGCCTGTTCACTGCTGAGCCAGTGGAggtgctgtttgctgctgcaggagagggagcctctgtctcagtgtgcgCTGTGGAGAGGGGCGCAGCGAGCCGCCCTGGCCCCGGGTACGAGCACAGAGTGTCAGTGCAGAGCGGCTCTCTGACCCTGCGCTCACTCACAGCAGCTGACCAGGGAAACTACACAGTGAGGGACTGCAGCACCGACCACACCGTCAGCAgcatctctgtgtctgtgtctgtggcagACCCTCCTCTGGACAGAGCTGCTGTTGCTGTAGCTGTTGCTGTAGCTGTCCTCATCCTCCTGGCTCTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU136288 False 1639 lncRNA 0.52 4 2127793 2130255
TU136289 False 1462 lncRNA 0.55 7 2097818 2130255
TU136294 True 2063 lncRNA 0.50 2 2127793 2130255
TU136304 False 1456 TUCP 0.55 6 2097818 2130255

Neighbor

gene id symbol gene type direction distance location
AMCG00006316 NA coding downstream 63583 2027136 ~ 2034235 (-)
AMCG00006315 NA coding downstream 80884 2011362 ~ 2016934 (-)
AMCG00006314 NA coding downstream 98528 1991302 ~ 1999290 (-)
AMCG00006307 NA coding downstream 165416 1930634 ~ 1932402 (-)
AMCG00006305 NA coding downstream 227087 1866559 ~ 1870731 (-)
AMCG00006319 NA coding upstream 6569 2136824 ~ 2140157 (-)
AMCG00006325 NA coding upstream 76352 2206607 ~ 2208884 (-)
AMCG00006326 NA coding upstream 87776 2218031 ~ 2254916 (-)
AMCG00006329 NA coding upstream 147892 2278147 ~ 2300524 (-)
AMCG00006331 NA coding upstream 273300 2403555 ~ 2413961 (-)
G108948 NA non-coding downstream 40196 2052991 ~ 2057622 (-)
G108834 NA non-coding downstream 211542 1885965 ~ 1886276 (-)
G108805 NA non-coding downstream 314252 1734195 ~ 1783566 (-)
G108789 NA non-coding downstream 376687 1719629 ~ 1721131 (-)
G108791 NA non-coding downstream 427187 1664948 ~ 1670631 (-)
G109090 NA non-coding upstream 216267 2346522 ~ 2390552 (-)
G109091 LOC103376870 non-coding upstream 220499 2350754 ~ 2356238 (-)
G109099 NA non-coding upstream 264494 2394749 ~ 2397990 (-)
G109163 NA non-coding upstream 688214 2818469 ~ 2832329 (-)
G109294 NA non-coding upstream 1156015 3286270 ~ 3287229 (-)
AMCG00006313 NA other downstream 73675 2020001 ~ 2024143 (-)
G108829 NA other downstream 215981 1881282 ~ 1881837 (-)
AMCG00006298 NA other downstream 372970 1722561 ~ 1724848 (-)
G108784 NA other downstream 437814 1646480 ~ 1660004 (-)
AMCG00006279 NA other downstream 587278 1358397 ~ 1510540 (-)
AMCG00006328 NA other upstream 193876 2324131 ~ 2329991 (-)
AMCG00006344 NA other upstream 451082 2581337 ~ 2586846 (-)
AMCG00006354 NA other upstream 758231 2888486 ~ 2894534 (-)
AMCG00006390 NA other upstream 1568630 3698885 ~ 3728519 (-)
AMCG00006398 NA other upstream 1599787 3730042 ~ 3815517 (-)

Expression


Co-expression Network