G108987


Basic Information

Item Value
gene id G108987
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2292697 ~ 2292896 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU136373
GATGACAGAGTGCATAGATGCTCTTaagttacatatatttaaataaatacacacacacacacacacacacacacacacacagtatatataactATAGACTTCTTAACGCATCTTCATACAGAATGGGGAATCATGGGAGTCTGCAGGATGCCAGAGGAGCTCAGCATAGTGTGAATGGAAGCAGATGGCAAGTACTTTTG

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU136373 True 200 lncRNA 0.40 1 2292697 2292896

Neighbor

gene id symbol gene type direction distance location
AMCG00006323 NA coding upstream 86726 2204897 ~ 2205971 (+)
AMCG00006324 NA coding upstream 99812 2191525 ~ 2192885 (+)
AMCG00006318 NA coding upstream 121323 2154397 ~ 2171374 (+)
AMCG00006317 NA coding upstream 154996 2134356 ~ 2137701 (+)
AMCG00006310 NA coding upstream 203695 2080532 ~ 2089002 (+)
AMCG00006327 NA coding downstream 73396 2366292 ~ 2371085 (+)
AMCG00006330 NA coding downstream 98823 2391719 ~ 2396364 (+)
AMCG00006334 NA coding downstream 235335 2528231 ~ 2539840 (+)
AMCG00006337 NA coding downstream 296488 2589384 ~ 2594077 (+)
AMCG00006338 NA coding downstream 306358 2599254 ~ 2605484 (+)
G108889 NA non-coding upstream 3242 2250567 ~ 2289455 (+)
G108914 NA non-coding upstream 30200 2259942 ~ 2262497 (+)
G108890 NA non-coding upstream 40351 2159977 ~ 2252346 (+)
G108884 NA non-coding upstream 162434 2128318 ~ 2130263 (+)
G108878 NA non-coding upstream 164697 2098349 ~ 2128000 (+)
G109004 LOC103376870 non-coding downstream 57858 2350754 ~ 2356238 (+)
G109010 NA non-coding downstream 110007 2402903 ~ 2403151 (+)
G109011 LOC100846954 non-coding downstream 143162 2436058 ~ 2518534 (+)
G109217 NA non-coding downstream 711960 3004856 ~ 3028646 (+)
G109218 NA non-coding downstream 723883 3016779 ~ 3069228 (+)
G108626 rps5,LOC107086176 other upstream 478087 1637397 ~ 1814610 (+)
AMCG00006294 NA other upstream 551361 1735932 ~ 1741336 (+)
G108585 NA other upstream 862710 1350383 ~ 1429987 (+)
AMCG00006275 NA other upstream 977139 1286829 ~ 1315558 (+)
AMCG00006276 NA other upstream 1006645 1278460 ~ 1286052 (+)
AMCG00006366 NA other downstream 950041 3242937 ~ 3252080 (+)
AMCG00006368 NA other downstream 981886 3274782 ~ 3286179 (+)
G109309 NA other downstream 1068458 3361354 ~ 3365565 (+)
G109362 NA other downstream 1210285 3503181 ~ 3506679 (+)
AMCG00006379 NA other downstream 1277143 3570039 ~ 3621796 (+)

Expression


Co-expression Network