G109011 (LOC100846954)


Basic Information

Item Value
gene id G109011
gene name LOC100846954
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2436058 ~ 2518534 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU136404
aaatgccacggcctacctgagcattgtttctgacaggataatgcaccatgtcacaaaggtcgaatcatttcaaattggtttcttgaacatgacaatgagttcactgtactaaactggcccccacagtcaccagatctcaacccaatagagcatctttgggatgtggtggaacgggagcttcgtgccctggatgtgcatcccacaaatccccatcaactgcaagatgctatcctatcaatatgggccaacatttctaaagaatgctttcagcaccttgttgaatcaatgccacgtagaattaaggcagttctgaaggcgaaagggggtcaaacacagtattagtatggtgttcctaataatcctttaggtgagtgtatacatatatacatacagtgggggaaaaagtatttgatcccctgctgattttgtacatttgccaaaagaaatgatcagtctataattttaatggtaggtgtattttaacagtgagagacagaataacaacaaaaaaattaagaaaaatgcatttcaaaaaagttatgaattgatttgcacgttaatgagggaaataagtatttgaccccttcaacttagtacttggtggcaaaacccttgttggcaatcacagaggtcagatgtttcttgtagttggccaccaggtttgcacacatctcaggagggattttgtcccactcctctttgcagatcctctccaagtcattaaggtttcgaggctgtcgtttggcaactcgaaccttcagctccctccacagattttctatgggattaaggtctggagactggctaggccactccaggaccttaatgtgcttcttcttgagccactccttagTTGCCTtgcctgtgtgttttgggtcattgtcatgctggaatacccatccacgacccattttcaatgccctggctgagggaaggaggttctcatccaagatttgacggtacatggccctgtccatcgtccctttgatgcgatGCAGTTGTcatgtccccttagcagaaaaacacccccaaagcataatgtttccacctccatgtttgacggtggggatggtgttcttggggtcattcctcctcctccaaacacagtGAGTTGAGTCTatgccaaagagcttgattttggtctcatctgaccacaacactttcacccagttctcctctgaatcattcagatgttcatttgcaaacttcagacgggcctgtacatgtgctttcttgagcagggggacgtTGCAggtgctgcaggatttcagtccttcatggCGTAATTTGTTACcagttgttttcttggtgactatggtcccagctgccttgagatcattaacaagatcctcccgtgtagttctgggcagattcctcaccgttcttatgatcattgaaactccatgaggtgagatcttgcatggagccccagaccgagggagactgacagttattttgtgtttcttccatttgcgtataatcgcaccaactgttgtcaccttctcaccaagctgcttggcgatgatcttgtagcccattccagccttgtgtaggtctacaatcttgtccctgacatccttggacagctcttttgttttggccatggtggagagtttggaatctgattgattgattgcgcCTGTGGACAGGTGTTTttctgggagccagaaatcttgctgattgagatacttatttccctcattaacatgcaaatcaatttataacttttttgaaatgcgtttttatggatttttt
>TU136405
aaatgccacggcctacctgagcattgtttctgacaggataatgcaccatgtcacaaaggtcgaatcatttcaaattggtttcttgaacatgacaatgagttcactgtactaaactggcccccacagtcaccagatctcaacccaatagagcatctttgggatgtggtggaacgggagcttcgtgccctggatgtgcatcccacaaatccccatcaactgcaagatgctatcctatcaatatgggccaacatttctaaagaatgctttcagcaccttgttgaatcaatgccacgtagaattaaggcagttctgaaggcgaaagggggtcaaacacagtattagtatggtgttcctaataatcctttaggtgagtgtgtatgtatatatatatat

Function

NR:

description
transposase-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU136404 True 1755 lncRNA 0.44 3 2436058 2452829
TU136405 False 393 lncRNA 0.43 3 2436058 2518534

Neighbor

gene id symbol gene type direction distance location
AMCG00006330 NA coding upstream 39694 2391719 ~ 2396364 (+)
AMCG00006327 NA coding upstream 64973 2366292 ~ 2371085 (+)
AMCG00006323 NA coding upstream 230087 2204897 ~ 2205971 (+)
AMCG00006324 NA coding upstream 243173 2191525 ~ 2192885 (+)
AMCG00006318 NA coding upstream 264684 2154397 ~ 2171374 (+)
AMCG00006334 NA coding downstream 9697 2528231 ~ 2539840 (+)
AMCG00006337 NA coding downstream 70850 2589384 ~ 2594077 (+)
AMCG00006338 NA coding downstream 80720 2599254 ~ 2605484 (+)
AMCG00006335 abcf1,LOC107745711,LOC107687077 coding downstream 94558 2613092 ~ 2625633 (+)
AMCG00006336 ppp1r10 coding downstream 122878 2641412 ~ 2649109 (+)
G109010 NA non-coding upstream 32907 2402903 ~ 2403151 (+)
G109004 LOC103376870 non-coding upstream 79820 2350754 ~ 2356238 (+)
G108987 NA non-coding upstream 143162 2292697 ~ 2292896 (+)
G108889 NA non-coding upstream 146603 2250567 ~ 2289455 (+)
G108914 NA non-coding upstream 173561 2259942 ~ 2262497 (+)
G109217 NA non-coding downstream 486322 3004856 ~ 3028646 (+)
G109218 NA non-coding downstream 498245 3016779 ~ 3069228 (+)
G109260 NA non-coding downstream 716371 3234905 ~ 3236401 (+)
G109301 LOC103376870 non-coding downstream 821555 3340089 ~ 3393931 (+)
G109389 NA non-coding downstream 1030080 3548614 ~ 3548988 (+)
G108626 rps5,LOC107086176 other upstream 621448 1637397 ~ 1814610 (+)
AMCG00006294 NA other upstream 694722 1735932 ~ 1741336 (+)
G108585 NA other upstream 1006071 1350383 ~ 1429987 (+)
AMCG00006275 NA other upstream 1120500 1286829 ~ 1315558 (+)
AMCG00006276 NA other upstream 1150006 1278460 ~ 1286052 (+)
AMCG00006366 NA other downstream 724403 3242937 ~ 3252080 (+)
AMCG00006368 NA other downstream 756248 3274782 ~ 3286179 (+)
G109309 NA other downstream 842820 3361354 ~ 3365565 (+)
G109362 NA other downstream 984647 3503181 ~ 3506679 (+)
AMCG00006379 NA other downstream 1051505 3570039 ~ 3621796 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G833240 LOC100846954 non-coding NC_048573.1 CM023227.2 66929691 ~ 66931359 (+)
eurasian perch (Perca fluviatilis) G182980 NA non-coding NC_053129.1 CM020926.1 8040623 ~ 8041804 (-)
mexican tetra (Astyanax mexicanus) G235573 NA unknown NW_019170901.1 APWO02000499.1 188732 ~ 198525 (-)