G109099


Basic Information

Item Value
gene id G109099
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2394749 ~ 2397990 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU136528
AATTCTCTTCAATGACAGTTTGTCGTGtctttaatactaataatttcaTATCCTATTCTTAAATTCAAGTCTGCCTGTTGGCCCttattgcaatattattttattaaactgtttaCATATGGTACAATCTCTATTAAAattagataaaaaaataaaaaaataaaacatgtaggGCTTATTACGTCGGTTTTCTACCCCTGCCTGATGATCCGTTTATTTGCTCCCTTTCTCAGCAATACAAACAGGGTCCAGAGACTCAGGAGACGCAGAAAAGAGAGGCCAGCAGAGCGGGAGAGGCGAAAGAGGAGTGCAGGAGGAAGATGGAGGCCTGAATTACGCCACTTTAGACATCCGCAAAGATTCCAAACGCAAGAGACCGGAAGTGCTGAACAAACACACGTGTACTTACTCTGAAATTAATCACGGTACCACACCGTAAGGGCATTCAGGTGTTTGATCTTCGGACTGACTGCCAAAACGCCCACCTGTTTCTCTGAATGACGTTTGGATTTCCCAATGCTTTCAGGCGTAATCAATCCTTTATTGAAAGTGGTGAGCTACAAAAGCCTCTCTGTATGGCCAGGGCTGGAGATCCACGAGGTACTGTCAGATAGCCACTGAATTAGCTCTGCAGGGAAGGATGCCTGTTTTAAGGGTTGTGCAGTTTGTCATGCAGTCTGTGGTTTTCTCCTGTCAAAAACGTGCGCTGCAGTGAACATTTCACTGAAGACatggggatgggggggacaAATGAAAGTACATGAAGCTCAGTTAGGGGCACCTCTTTTCACTAAACTATTTTACATAGTACAGTAGAGCAGAGggctccagccctggtcctggagaggtCCTGATCCTGTCACTGTATAACATTTGTAAATCTAAAAGAAGAAACACCACCATGGAGATTCCCAGCTGGAGATGTATTTCTCAGTGCCAGTGCTGGTAACaaatctcactctctcagtgcAGCACGGTCTCTCACACATGCAGTGCACGTGACATGACTCGGGGCTGTCTGTCAGCCAGAATACTTAGTAAGAGGCTTTTATTTCAGTGGTTTTgtgaaatccccccccccccaccaggccCTGAAAAGAGAGTGCAGTTAACATTGAGACACTGCCACCTGCTGTTGAAACTAATATtgattttctaatttattaaaGCAGACTTGTATTTGTATCTTAGTGAGTTGCAAGTTTTAGTGTGTTGTTCAGTATCTTGTTCTTTCATATCGCACTGTTTGTGGAATTCATTATTACAATAATGTCAAGTTAATGTCCTGTAACAACTAATTAAACAGAATAATGTTTAGTACTGTACTTCAAATAGCCACTAGGTGGACCCAAAGACTTACAGATGAATGCAACCTTCATCATCATTAATGCTtaataaaaacctaaacaaGTTATTAACTTAAGGTTGAAATTCTTAATGATTGCAGATCAGCTCCTAAAGGTTTAAACAAGATGATGGTGAGTGTAACAgagcatatatatacaccgatcagccataacatcatgaccacctgcctaatattgtgtaggtcccccttttgccaccaaaacagccctgacccgtcaaggcatgaaggtgtgctgtggtatctggcaccaagtcgttagcagcagatcctttaagtcctgtaagttgcgaggtggggcctccatggatcggactgtttgtccagcacatcccacaaatgctcgattggattgagatctggggaatttggaggccaagtcaacaccttgaactcgtgattcatcagaccaggccaccttcttccattgctccatggtccagttctgatgctcacgtgcccattatggacaggggtcagcatgggcacccagactggtctgcggctacacagtcccatacacaacaaactgcgatgcactgtgtgttctgacacctttctatcagaaccagcattcactttttcagcaatttgagctacagtagctcatctgttggatcggaccacacgggccagccttcactccccacgtgcatcagtgagccttggccgcccatgaccctgtcgccggttcaccgcttttccttccttggaccacctTTGATagttactgaccactgcagactgggaacagcccacaagagctgcagttttggagatgctctgacccagtcgtctagccatcacaatgtggcccttgtcaaagtcgctcagatccttatgctgcccatttttcctgcttctaacacatcaactttgaggacaaaatgttcacttgctgcctaatatatcccacccactgacaggtgccatgataacgagattatcagtgttattcatttcacctgtcagtgctcataatgtaaTGGCGGATTGGTATAATGTTAGTTTCAGATAAAGCATACTTgacgcgcacacacactgaaatataGTGAATGAAAACATCTAGACCTCATAGCTacgtatacacacacagttacaccaACCATCTGTTAGTGACATGATTCTTGACCATAAAAGCCCCCCAGAGTTACGGAGTCATTTAGTGGGTCTGCAGTGTTATGCGATTAGTGTGAGTGAGTCAGCAGAGCAGGAAGGCAATGATGAAGCAGAGCAGATGGGCCAGTGGGCTCCCAGCAGCCCCCAGCCAGCGGGTGTCACAGACTGGGATGCCATCAGTGTCACACAGTCAGCCAGTGAGCTGTGCATAACATGGACTGTATTTACTCTCACACTATTAATCCTCACAGTGAAGGCTTTCCATTTCCCCAGGTCCCTGTGTAACCCTGTCACCTTGCTCACAAAGAGATGAACATTTAGTCTTCATTTTCCACAGCAGTGTAGTGATGGCTATGAGGACCAGGGTGAGGATCACTATCAGAGCGATGGCCCATCCTGCAAGGCCAC

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU136528 True 2893 lncRNA 0.45 2 2394749 2397990

Neighbor

gene id symbol gene type direction distance location
AMCG00006329 NA coding downstream 94225 2278147 ~ 2300524 (-)
AMCG00006326 NA coding downstream 139833 2218031 ~ 2254916 (-)
AMCG00006325 NA coding downstream 185865 2206607 ~ 2208884 (-)
AMCG00006319 NA coding downstream 254592 2136824 ~ 2140157 (-)
AMCG00006321 NA coding downstream 265811 2124372 ~ 2128938 (-)
AMCG00006331 NA coding upstream 5565 2403555 ~ 2413961 (-)
AMCG00006332 NA coding upstream 142280 2540270 ~ 2550180 (-)
AMCG00006333 NA coding upstream 160885 2558875 ~ 2561435 (-)
AMCG00006340 NA coding upstream 177671 2575661 ~ 2579656 (-)
AMCG00006342 NA coding upstream 208232 2606222 ~ 2609426 (-)
G109090 NA non-coding downstream 4197 2346522 ~ 2390552 (-)
G109091 LOC103376870 non-coding downstream 38511 2350754 ~ 2356238 (-)
G108948 NA non-coding downstream 337127 2052991 ~ 2057622 (-)
G108834 NA non-coding downstream 508473 1885965 ~ 1886276 (-)
G108805 NA non-coding downstream 611183 1734195 ~ 1783566 (-)
G109163 NA non-coding upstream 420479 2818469 ~ 2832329 (-)
G109294 NA non-coding upstream 888280 3286270 ~ 3287229 (-)
G109322 LOC103376870 non-coding upstream 942128 3340118 ~ 3433270 (-)
G109334 NA non-coding upstream 969207 3367197 ~ 3369548 (-)
G109432 NA non-coding upstream 1150624 3548614 ~ 3561944 (-)
AMCG00006328 NA other downstream 64758 2324131 ~ 2329991 (-)
G108938 NA other downstream 264494 2097818 ~ 2130255 (-)
AMCG00006313 NA other downstream 370606 2020001 ~ 2024143 (-)
G108829 NA other downstream 512912 1881282 ~ 1881837 (-)
AMCG00006298 NA other downstream 669901 1722561 ~ 1724848 (-)
AMCG00006344 NA other upstream 183347 2581337 ~ 2586846 (-)
AMCG00006354 NA other upstream 490496 2888486 ~ 2894534 (-)
AMCG00006390 NA other upstream 1300895 3698885 ~ 3728519 (-)
AMCG00006398 NA other upstream 1332052 3730042 ~ 3815517 (-)
AMCG00006414 NA other upstream 1754826 4152816 ~ 4158123 (-)

Expression


Co-expression Network