G109309


Basic Information

Item Value
gene id G109309
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3361354 ~ 3365565 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU136837
aataaaaccattttaaggTTCACCGCTTTGATGGTCTGGACCGCTTGATTGGCTTCTACTAGATTTCGTCTGGTCgcttgaaaataaaaccccatAACGTGCATTTCCgtttcctcttcctctgctcTATATTGTGATGGCATCGGTAGTAAAATTACCACTGCACAGCCAGCAATACCGGGGAAATAACGGAGAACTTACCGACAAGAGGTTTGCACCGACGAGCGGGATTAGAAGTAACAAGGCGACAACACCGCAAAGACCGGCCGCCCAAGCTCGGCCACTAACCCTGCAGGAGCCGGTCCACTGTGCGCTGCCCATCTCTGCGGAGCAACTACCGCAAAAAACATAGAAAACGTGCCACCGAGACGCTTTTTAAGACTGACGGGCCACAGTCATGGAGCGGAGAGTATCTCTCATCCTGCTGTTCTCAGGGCTCTGCAGTCTCTCCTCATGTCTCGCTCGTCAGTATGTCTTAGTGAACACACCTCTGGGCTGGAGTGACGCACAACAATactgcagagagaaacacactgacCTGGCCTCCATTGACAATGCAGAAGAACTGGACAGGCTGCTAAACAGTGCAGGCAGGACTGATAAACTCCAAGCATGGATAGGACTGTACAATGGCATCAGCAATTGGAACTGGTCTCTAAAGCAAAATGACTACTATAATGTGGAGTATTACAATTGGAGATCAGGACAACCAGACAACTTTTATGGTGCAGAGTACTGTATCGAAATGAACCCTTCTGGTACATGGAATGATTTCCAGTGCTCCGGGAAGAAGTACTTCATTTGTTATCAAAG
>TU136838
aataaaaccattttaaggTTCACCGCTTTGATGGTCTGGACCGCTTGATTGGCTTCTACTAGATTTCGTCTGGTCgcttgaaaataaaaccccatAACGTGCATTTCCgtttcctcttcctctgctcTATATTGTGATGGCATCGGTAGTAAAATTACCACTGCACAGCCAGCAATACCGGGGAAATAACGGAGAACTTACCGACAAGAGGTTTGCACCGACGAGCGGGATTAGAAGTAACAAGGCGACAACACCGCAAAGACCGGCCGCCCAAGCTCGGCCACTAACCCTGCAGGAGCCGGTCCACTGTGCGCTGCCCATCTCTGCGGAGCAACTACCGCAAAAAACATAGAAAACGTGCCACCGAGACGCTTTTTAAGGTGGATACATCTTGTCATATGACTACGGTTTGACCCACATGGCTCCTCTGGTCATGTGTTCCACGGAAAGCAGACAGGGCAGGGTACTCGGAAACTGCGGACATTGAGGCTCAAACCGCAGCGCTTTGGCTAGCATTGGAACCTGCAACGGAAGAGGAGCCAAGATGGCGGTTCACTAAAAGCAGTTTCACATGGCGTTTTCTATCCTTCAACGTCACTGCCTGGTATTGATGAAATACAAAGTTCAGTAAGACGGTGACAGAGTGACAGGCACACAGTGACACAGGATtgggaggcagagagacacacgACCACAGCACCCAGACATTGACACAGAGGGAGTTACTTCAAGTGACCTTTGGATCAGGTACTTGTGTCACGTatgcatggttttatttatatatttattttaacaatctTAATCACTTTTGGTTAATAATGTGTGTCTTTATTGTTATGATGCATTACTTTGTCTGGCGGTGCTCAGGGAAGACTTGAACCACTTTAGATACACCATGTTCCTCTACTGTGTTACTGGTGTCATTTTACTGGATCCCTTGTTAATGGGCAAACAGCTTACCACAGGCAACAGACAGCTGACAGCTATAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU136837 False 813 TUCP 0.48 3 3361354 3365565
TU136838 True 989 lncRNA 0.47 2 3361354 3363115

Neighbor

gene id symbol gene type direction distance location
AMCG00006369 NA coding upstream 6548 3352205 ~ 3354806 (+)
AMCG00006373 NA coding upstream 12133 3342539 ~ 3349221 (+)
AMCG00006370 NA coding upstream 59995 3292743 ~ 3301359 (+)
AMCG00006367 NA coding upstream 128377 3220219 ~ 3232977 (+)
AMCG00006364 NA coding upstream 183815 3151072 ~ 3177539 (+)
AMCG00006375 NA coding downstream 53750 3419315 ~ 3421518 (+)
AMCG00006374 NA coding downstream 60860 3426425 ~ 3428561 (+)
AMCG00006378 NA coding downstream 176153 3541718 ~ 3552354 (+)
AMCG00006383 NA coding downstream 219890 3585455 ~ 3596853 (+)
AMCG00006384 NA coding downstream 258382 3623947 ~ 3632121 (+)
G109260 NA non-coding upstream 124953 3234905 ~ 3236401 (+)
G109218 NA non-coding upstream 292126 3016779 ~ 3069228 (+)
G109217 NA non-coding upstream 332708 3004856 ~ 3028646 (+)
G109011 LOC100846954 non-coding upstream 842820 2436058 ~ 2518534 (+)
G109010 NA non-coding upstream 958203 2402903 ~ 2403151 (+)
G109389 NA non-coding downstream 183049 3548614 ~ 3548988 (+)
G109405 NA non-coding downstream 333543 3699108 ~ 3714779 (+)
G109392 NA non-coding downstream 356954 3722519 ~ 3755041 (+)
G109412 NA non-coding downstream 364322 3729887 ~ 3730840 (+)
G109396 NA non-coding downstream 406984 3772549 ~ 3774544 (+)
AMCG00006368 NA other upstream 75175 3274782 ~ 3286179 (+)
AMCG00006366 NA other upstream 109274 3242937 ~ 3252080 (+)
G108626 rps5,LOC107086176 other upstream 1546744 1637397 ~ 1814610 (+)
AMCG00006294 NA other upstream 1620018 1735932 ~ 1741336 (+)
G108585 NA other upstream 1931367 1350383 ~ 1429987 (+)
G109362 NA other downstream 137616 3503181 ~ 3506679 (+)
AMCG00006379 NA other downstream 204474 3570039 ~ 3621796 (+)
AMCG00006385 NA other downstream 233676 3599241 ~ 3612758 (+)
AMCG00006387 NA other downstream 272178 3637743 ~ 3648911 (+)
AMCG00006393 ppp1r11,LOC107711309 other downstream 493369 3858934 ~ 3864732 (+)

Expression


Co-expression Network