G109392


Basic Information

Item Value
gene id G109392
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3722519 ~ 3755041 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU136954
ggggtcaaacacagtattagtatggtgttcctaataatcctttaggtgaCTATATAGTGCTGTGACGAGAtacattcagaaaacagtgctgaatacaagGCAGTGAAGACGTCTGTGCagccagatccatcacaatgccGCGCAGCTGACCCTGAAGcacaggggtctccaaccctggtcctggagagcccctatccagcaggttttagaggtcacccttctATTGCCATTTTATAAACACCTTGAAGTATTTCAGTCTGATCAGTGATGCTTTGGTTTGGTAAATTTAGTAGTTTAGAAACCATTGAAGCAATtatctccttcctccagagccgctccttctcatccctggcccctaaatggtggaacgacctgcccactgaagatGCATCTCttctgacagtacttgtaatattagtccttttatcactgctagatagcactttacagttttattatgcttctcgcgttcttgattgttctcctccttgctccctttcccgtagccctagtctgtaaccctacatcttgacagcacttagctttcaccatccaggatgtaggaagtcacttactgtacttgtgtaaattgtaaattggaatttgtaaaatgtattattttgaattgctgttttagctaaattgaatttataatgattgatgccttgtacttcactgtatttttgcactttgttcgcacttatgttgtaagttgccctggataagggcgtctgccaagaaataaaaataataataataatcagaatacctgcagcctcttAGCAAGAGCTCCCTTGGTTGAtgtgcttaattgattaataaatcaCATGTGTTCCTA

Function

NR:

description
PREDICTED: uncharacterized threonine-rich GPI-anchored glycoprotein PJ4664.02-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU136954 True 838 lncRNA 0.41 2 3722519 3755041

Neighbor

gene id symbol gene type direction distance location
AMCG00006386 NA coding upstream 53588 3653239 ~ 3668931 (+)
AMCG00006384 NA coding upstream 90398 3623947 ~ 3632121 (+)
AMCG00006383 NA coding upstream 125666 3585455 ~ 3596853 (+)
AMCG00006378 NA coding upstream 170165 3541718 ~ 3552354 (+)
AMCG00006374 NA coding upstream 293958 3426425 ~ 3428561 (+)
AMCG00006392 NA coding downstream 59572 3814613 ~ 3819824 (+)
AMCG00006396 NA coding downstream 68530 3823571 ~ 3824069 (+)
AMCG00006394 NA coding downstream 70527 3825568 ~ 3826749 (+)
AMCG00006395 ddx39b,uap56,LOC105012335,LOC104931065,LOC103042292 coding downstream 77220 3832261 ~ 3839998 (+)
AMCG00006404 NA coding downstream 138222 3893263 ~ 3896458 (+)
G109405 NA non-coding upstream 7740 3699108 ~ 3714779 (+)
G109389 NA non-coding upstream 173531 3548614 ~ 3548988 (+)
G109301 LOC103376870 non-coding upstream 328588 3340089 ~ 3393931 (+)
G109260 NA non-coding upstream 486118 3234905 ~ 3236401 (+)
G109218 NA non-coding upstream 653291 3016779 ~ 3069228 (+)
G109396 NA non-coding downstream 17508 3772549 ~ 3774544 (+)
G109523 LOC100846954 non-coding downstream 154920 3909961 ~ 3911048 (+)
G109530 NA non-coding downstream 180939 3935980 ~ 3936902 (+)
G109532 NA non-coding downstream 188728 3943769 ~ 3943994 (+)
G109541 NA non-coding downstream 221687 3976728 ~ 4035308 (+)
AMCG00006387 NA other upstream 73608 3637743 ~ 3648911 (+)
AMCG00006379 NA other upstream 100723 3570039 ~ 3621796 (+)
AMCG00006385 NA other upstream 109761 3599241 ~ 3612758 (+)
G109362 NA other upstream 215840 3503181 ~ 3506679 (+)
G109309 NA other upstream 356954 3361354 ~ 3365565 (+)
AMCG00006393 ppp1r11,LOC107711309 other downstream 103893 3858934 ~ 3864732 (+)
G109538 NA other downstream 208556 3963597 ~ 3963996 (+)
G109570 NA other downstream 397775 4152816 ~ 4155749 (+)
AMCG00006413 NA other downstream 404482 4159523 ~ 4167952 (+)
G109714 NA other downstream 721893 4476934 ~ 4477570 (+)

Expression


Co-expression Network