G109396


Basic Information

Item Value
gene id G109396
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3772549 ~ 3774544 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU136961
GGCTGCCTCCTGCTCTCCGGCTGTCTCTGCTGCCTCTGGAGCAGGAGAGgtGGTGTTCAGTGTGTTGGAAGGAGTGAAGGAGCAGTGCAGGCAAACGATGTGTGGTCAGTTTATGCCAATGCAGAAATGCACACAGACCCTAACTGCACCCTGACGAGACGAGCTGCAGAGGAGCGCTCGGTGTATGTTCTCCAGGGTGGGCCGGAACCGGAATTTTAAATACTACTTTGTAGATATTCAAATGTGCCTTTAAATACCATcagcattattttcaaaaaggaTTGTTTGATCATTTTTTAAAGACTAATTTATGTAACCAAATCTCATCTGTTTGTAAGAGTGCAGGAAAACGGACCCTGGGCACATTTTACAGGCTCTTCTAAGGAACCGTATGAAGTGACCCCAGATCAGGTTGCAGACACTTCCTTGCAATTCGTTTCTGTCAAGGGTGTGATAACAACTCCACTAACTAACAGGATGGTACTGGTGGTTTCCTGTTCACTGAATAGCCCTTGTTCAAATCCCCTGCACTCTTTATTTAGAACCATTTCCTTGACATTTTATATGACTACAATTGATTCTTAAGGCCCTAATTGTGTAACTTATCAAAAATAGAAGTTGGTCGCAGAGATGTGTGAAATGCctgtatgtaatttaatttatgttttaaaggtgcagaaatgtgaatattttgttgtatccttatactgaaatatatattaaattaagaaaatcagGTTTTATAAATTGAAATAGAAATAGCATTTCAACCAGCCTCATTTCATCCTAACTTTTCGAAAATCATGTTGATATTagttgaaagaatgaaaaaaaagcttttaactaAACAGATActgtatctttttatttgttagcTGGGAGATAGAAAGCAAATTTGCATGTGCAGAAAAGGTATTACAGACAGTATGCAGTTATTAGGTGTTTATTAATGGTGTCTACTAACATGTATGAATGCAACAGAAATGGTTGTACTTGTAAGTATGCATTAACCAGACATAAAGCAGTAACTCTATTGTGTGACATTTCACcccatttaataatataaaactcaatatacaacaataaatatatacaaggaaagaaacaaaatcaaaagtataaCAAATCGAATCTTACATcaagtgtatataaatatgggGTAATGTAAGTGGATAGTGCAAATACACAGATGTGCAAatgagcaaataaataatacactgtatatatacactgatcaaaGTGTCCGTGGGTTATTGTCAgcgctgttgttgctgtgctgtGGTCAGTGAGGGTGCTGGTCCTTGGCAGCGTCCGCATTACGGATCTGGGTGGCTTGGGGGTATTATTGCTCCCGAGACTCTCTGTGTTCACCTTGGAGCTGCTGTAGCATTTCCTGAGCGCAGCAGTGGGGTGCACTTCCCAACCTGCAGGACATCTGCACCAGAAGGAGCAGGACTGATGCCAGGAGAATCATTAAGGATCCCAGCCACCCGTACAATGGGCTCCTCCTGGTGCAGATATCCTGCAGGTTGGAAAGTGCACCCCAGGTGGTGCTCTCAGCCAACCGCACCCCTCCGTGCAGGGTCTTCAGTCCTCAGTATCTCGGGGCCATCCTAGACTTTCCAGACGTCTGAGGTGATGGAGGCGTTCCGTGTCGAGTCCTGTGTGCTGTGAACGCTGAGGTGCTCACCCTCTCCTCTGGGCCCCCACTGATCCTG

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04650 Natural killer cell mediated cytotoxicity
ko04612 Antigen processing and presentation
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
TU136961 True 1718 lncRNA 0.42 3 3772549 3774544

Neighbor

gene id symbol gene type direction distance location
AMCG00006389 NA coding upstream 8921 3749003 ~ 3763628 (+)
AMCG00006386 NA coding upstream 103618 3653239 ~ 3668931 (+)
AMCG00006384 NA coding upstream 140428 3623947 ~ 3632121 (+)
AMCG00006383 NA coding upstream 175696 3585455 ~ 3596853 (+)
AMCG00006378 NA coding upstream 220195 3541718 ~ 3552354 (+)
AMCG00006392 NA coding downstream 40069 3814613 ~ 3819824 (+)
AMCG00006396 NA coding downstream 49027 3823571 ~ 3824069 (+)
AMCG00006394 NA coding downstream 51024 3825568 ~ 3826749 (+)
AMCG00006395 ddx39b,uap56,LOC105012335,LOC104931065,LOC103042292 coding downstream 57717 3832261 ~ 3839998 (+)
AMCG00006404 NA coding downstream 118719 3893263 ~ 3896458 (+)
G109392 NA non-coding upstream 17508 3722519 ~ 3755041 (+)
G109412 NA non-coding upstream 41709 3729887 ~ 3730840 (+)
G109405 NA non-coding upstream 57770 3699108 ~ 3714779 (+)
G109389 NA non-coding upstream 223561 3548614 ~ 3548988 (+)
G109301 LOC103376870 non-coding upstream 378618 3340089 ~ 3393931 (+)
G109523 LOC100846954 non-coding downstream 135417 3909961 ~ 3911048 (+)
G109530 NA non-coding downstream 161436 3935980 ~ 3936902 (+)
G109532 NA non-coding downstream 169225 3943769 ~ 3943994 (+)
G109541 NA non-coding downstream 202184 3976728 ~ 4035308 (+)
G109571 NA non-coding downstream 381420 4155964 ~ 4156206 (+)
AMCG00006387 NA other upstream 123638 3637743 ~ 3648911 (+)
AMCG00006379 NA other upstream 150753 3570039 ~ 3621796 (+)
AMCG00006385 NA other upstream 159791 3599241 ~ 3612758 (+)
G109362 NA other upstream 265870 3503181 ~ 3506679 (+)
G109309 NA other upstream 406984 3361354 ~ 3365565 (+)
AMCG00006393 ppp1r11,LOC107711309 other downstream 84390 3858934 ~ 3864732 (+)
G109538 NA other downstream 189053 3963597 ~ 3963996 (+)
G109570 NA other downstream 378272 4152816 ~ 4155749 (+)
AMCG00006413 NA other downstream 384979 4159523 ~ 4167952 (+)
G109714 NA other downstream 702390 4476934 ~ 4477570 (+)

Expression


Co-expression Network